View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_3 (Length: 698)
Name: NF16741_low_3
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 265 - 678
Target Start/End: Complemental strand, 23699097 - 23698675
Alignment:
| Q |
265 |
agacaatccgttatcgatgaaggaccttagatcgatttcattatgtaatgtgatatacaaagtcattttgaaggtggtagccaggagacttcagcctttc |
364 |
Q |
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| T |
23699097 |
agacaatcccatatcgatgaaggaccttagatcgatttcattatgtaatgtgatatacaaagtcattttgaaagtggtagccaggagacttcagcctttc |
23698998 |
T |
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| Q |
365 |
cttatcaagtatatatctattgcgcaagccgcttttgttgaaaatatatcgattcttgataatgttatggatgttatggaaactattcattatataaggt |
464 |
Q |
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| T |
23698997 |
cttatcaagtatatatctattgcgcaagccgcttttgttgaaaatatatcgattcttgataatgttatggttgttatggaaactattcattatataaggt |
23698898 |
T |
|
| Q |
465 |
gcaatactaggg--------ggtgatgcaaaacttaaaatagacattaggaaagcttattttgtggaagaagcattaggaaagcttatgatagggtttct |
556 |
Q |
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| T |
23698897 |
gcaagactaggggaaatattggtgatgcaaaacttaaaatagacattaggaaagcttattttgttgaagaagcattaggaaagcttatgatagggtttct |
23698798 |
T |
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| Q |
557 |
tcgaggtatctttattatagagaggttatgagtaagataggtttttgtgaaaaatggagaaaatggatttctatgtgcc---ttggatcaatacattact |
653 |
Q |
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| T |
23698797 |
tcgaggtatctttattat--tgaggttatgagtaagataggtttttgtgaaaaatggagaaaatggatttctatgtgccttgttggatcaatacattact |
23698700 |
T |
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| Q |
654 |
cgatattggttaatggggagagtgt |
678 |
Q |
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| T |
23698699 |
cgatattggttaatggggagagtgt |
23698675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 23699374 - 23699120
Alignment:
| Q |
11 |
acatcatcaagctacaacgcatatcagccagagtcacatagaaggaagatgataagctgaccaatgaatatttgattgaagaatttagagaagcattgta |
110 |
Q |
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| T |
23699374 |
acatcatcaagctacaacgcatatcagccagagtcacatagaaggaagatgataagctgaccaatgaatatttgattgaagaatttagagaagcattgta |
23699275 |
T |
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| Q |
111 |
tagcatgaattcagataaagcaatggggccgaatagactcagttccgctttttatgagagcttttgggacttgtgttgtcaagacatattgaaagcgcca |
210 |
Q |
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| T |
23699274 |
tagcatgaattcggataaagcactggggccgaatagactcagttccgctttttataagagcttttgggacttgtgttgtcaagacatattgcaagcgcca |
23699175 |
T |
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| Q |
211 |
agcaaccaagtcacggctggatcaatgctacttctctccacaactaaacaataca |
265 |
Q |
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| T |
23699174 |
agcaaccaaatcacggatggatcaatgctacttctctccacaactaaacaataca |
23699120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 655
Target Start/End: Complemental strand, 36719852 - 36719802
Alignment:
| Q |
605 |
gaaaaatggagaaaatggatttctatgtgccttggatcaatacattactcg |
655 |
Q |
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| T |
36719852 |
gaaaaatggagaaaatggacttctatgtgccttggatcaatcctttactcg |
36719802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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