View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_low_31 (Length: 407)
Name: NF16741_low_31
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_31 |
 | |
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| [»] scaffold2086 (1 HSPs) |
| | |
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| [»] scaffold1996 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 41537405 - 41537015
Alignment:
| Q |
1 |
cagcaagctctctaatcctttttcttctttctttacattcacttgtctcatccattaacttctctattcctctttcaatatcttccttcttcaccaacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41537405 |
cagcaagctctctaatcctttttcttctttctttacattcacttgtctcatccattaacttttctattcctctttcaatatcttccttcttcaccaacac |
41537306 |
T |
|
| Q |
101 |
accatcctcttcttcaccccatttcataggactcttcaccccaattttcacaccaacttttaatatttgcacaacaaaactttcattcaaaaattgatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41537305 |
accatcctcttcttcaccccatttcataggactcttcaccccaattttcacaccaacttttaatatttgcacaacaaaactttcattcaaaaattgatcc |
41537206 |
T |
|
| Q |
201 |
gcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaattgcaagatgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41537205 |
gcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaattgcaagatgcg |
41537106 |
T |
|
| Q |
301 |
acaatatcaataactgaggagcccaacccttaatcactaggcctctaccattgattcttccctcaaatccactctcctcaagccatttttt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41537105 |
acaatatcaataactgaggagcccaacccttaatcactaggcctctaccattgattcttccctcaaatccactctcctcaagccatttttt |
41537015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 41518426 - 41518036
Alignment:
| Q |
1 |
cagcaagctctctaatcctttttcttctttctttacattcacttgtctcatccattaacttctctattcctctttcaatatcttccttcttcaccaacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41518426 |
cagcaagctctctaatcctttttcttctttctttacattcacttgtctcatccattaacttctctattcctctttcaatatcttccttcttcaccaacac |
41518327 |
T |
|
| Q |
101 |
accatcctcttcttcaccccatttcataggactcttcaccccaattttcacaccaacttttaatatttgcacaacaaaactttcattcaaaaattgatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || |
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|
| T |
41518326 |
accatcctcttcttcaccccatttcataggactcttcaccccaattttcacaccaacttttaatatttgcacaactaaacattcattcaaaaattggtct |
41518227 |
T |
|
| Q |
201 |
gcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaattgcaagatgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
41518226 |
gcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaattgcaagatgcg |
41518127 |
T |
|
| Q |
301 |
acaatatcaataactgaggagcccaacccttaatcactaggcctctaccattgattcttccctcaaatccactctcctcaagccatttttt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |
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|
| T |
41518126 |
acaatatcaataactgaggagcccaacctttaatcactaggcctctaccattgattctttcctcaaatccactttcctcaatccatttttt |
41518036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 80 - 336
Target Start/End: Complemental strand, 41564719 - 41564460
Alignment:
| Q |
80 |
atcttccttcttcaccaacacaccatc---ctcttcttcaccccatttcataggactcttcaccccaattttcacaccaacttttaatatttgcacaaca |
176 |
Q |
| |
|
|||||| |||||||||||||| ||| | |||||| || ||||| || | |||||||| ||| |||| |||| ||||| ||||||||| ||||||| |
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|
| T |
41564719 |
atcttctttcttcaccaacacgccaacattctcttcgtctccccaatttacaggactctccactccaaccatcacgccaacccttaatatttccacaaca |
41564620 |
T |
|
| Q |
177 |
aaactttcattcaaaaattgatccgcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgtta |
276 |
Q |
| |
|
|| || ||||| ||||| ||||| | || | |||||||||| |||||| |||||||||||||||||||| | || |||||||| ||||| ||||||| |
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|
| T |
41564619 |
aacctctcattaaaaaactgatctccgaataacggccatgtaatcattggcacaccagcacatattgcttctaacgtcgaattccagccacagtgtgtta |
41564520 |
T |
|
| Q |
277 |
agaatcctccaattgcaagatgtgacaatatcaataactgaggagcccaacccttaatca |
336 |
Q |
| |
|
|||||||||||| || || ||||| | |||||| | ||||||||||||||||| |||| |
|
|
| T |
41564519 |
agaatcctccaactgaaaagtgtgatagtatcaaaacttgaggagcccaaccctttatca |
41564460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 48532895 - 48532787
Alignment:
| Q |
183 |
tcattcaaaaattgatccgcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatc |
282 |
Q |
| |
|
|||||||||||||| || ||||| | ||||| || |||| ||| | |||||||| ||| ||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
48532895 |
tcattcaaaaattggtcagcaaataacggccaagttaccaatggcaaaccagcacttatcccttcaagtgttgaattccatccacaatgtgttaagaatc |
48532796 |
T |
|
| Q |
283 |
ctccaattg |
291 |
Q |
| |
|
||||||||| |
|
|
| T |
48532795 |
ctccaattg |
48532787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 41511553 - 41511427
Alignment:
| Q |
183 |
tcattcaaaaattgatccgcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatc |
282 |
Q |
| |
|
|||||||||||||| || ||||| | |||||| || ||||||||||||||| || ||| ||||||| || ||||||||||||||||| || || |||| |
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|
| T |
41511553 |
tcattcaaaaattggtcagcaaataatggccaagttaccattggtacaccaaaacttatcccttcaagtgttgaattccaaccacaatgagtcaaaaatc |
41511454 |
T |
|
| Q |
283 |
ctccaattgcaagatgtgacaatatca |
309 |
Q |
| |
|
| ||||||| | |||||| ||||||| |
|
|
| T |
41511453 |
caccaattgaagaatgtgataatatca |
41511427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 8136275 - 8136667
Alignment:
| Q |
1 |
cagcaagctctctaatcctttttcttctttctttacattcacttgtctcatccattaacttctctattcctctttcaatatcttccttcttcaccaacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8136275 |
cagcaagctctctaatcctttttcttctttctttacattcacttgtctcatccattaacacttctattcctctttcaacatcttccttcttcaccaacac |
8136374 |
T |
|
| Q |
101 |
acca---tcctcttcttcaccccatttcataggactcttcaccccaattttcacaccaacttttaatatttgcacaacaaaactttcattcaaaaattga |
197 |
Q |
| |
|
|||| | ||||| |||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
8136375 |
accacttttttcttcctcaccccattgcattggactcttcaccccaatttttacaccaactttcaatatttgcacaactaaacattcattaaaaaattga |
8136474 |
T |
|
| Q |
198 |
tccgcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaattgcaagat |
297 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8136475 |
tctccaaaaagtggccatgtaaccattggtacaccagcacatattgcttccattgtagaattccaaccacaatgtgttaagaatcctccaattgcaggat |
8136574 |
T |
|
| Q |
298 |
gtgacaatatcaataactgaggagcccaacccttaatcactaggcctctaccattgattcttccctcaaatccactctcctcaagccattttt |
390 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8136575 |
gtgacaaaatcaataactgaggggcccaacccttaattactaagcctctatcattgattcttccctcaaatccactctcctcaatccattttt |
8136667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 35774614 - 35774660
Alignment:
| Q |
245 |
ttcaagagtagaattccaaccacaatgtgttaagaatcctccaattg |
291 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
35774614 |
ttcaagtgtagaattccaaccacaatgagttaagaatcccccaattg |
35774660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 20156831 - 20156935
Alignment:
| Q |
224 |
tggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaattgcaagatgtgacaatatcaataactgaggagcc |
323 |
Q |
| |
|
|||||||||||||||||| ||||| | || |||||||| ||||||||||| || ||| | || ||||| ||||||||||||||| | || |||||| |
|
|
| T |
20156831 |
tggtacaccagcacatatagcttctaatgttgaattccatccacaatgtgtcaaaaatgcacctattgctttatgtgacaatatcaaaacttgtggagcc |
20156930 |
T |
|
| Q |
324 |
caacc |
328 |
Q |
| |
|
||||| |
|
|
| T |
20156931 |
caacc |
20156935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 20155361 - 20155251
Alignment:
| Q |
181 |
tttcattcaaaaattgatccgcaaaaagtggccatgtaaccattggtacaccagcacatattgcttcaagagtagaattccaaccacaatgtgttaagaa |
280 |
Q |
| |
|
||||||| |||||||| || ||||| | |||||||||| |||||| || ||| |||| |||||| || |||||||| ||||||||||| ||||| |
|
|
| T |
20155361 |
tttcatttaaaaattgttcagcaaataaaggccatgtaatcattggcaccccaaagcatacaccttcaattgttgaattccatccacaatgtgtcaagaa |
20155262 |
T |
|
| Q |
281 |
tcctccaattg |
291 |
Q |
| |
|
||||||||||| |
|
|
| T |
20155261 |
tcctccaattg |
20155251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 347 - 297
Alignment:
| Q |
238 |
atattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaa |
288 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
347 |
atatagcttcaagtgtagaattccaaccacaatgagttaggaaccctccaa |
297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 347 - 297
Alignment:
| Q |
238 |
atattgcttcaagagtagaattccaaccacaatgtgttaagaatcctccaa |
288 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
347 |
atatagcttcaagtgtagaattccaaccacaatgagttaggaaccctccaa |
297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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