View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_low_34 (Length: 363)
Name: NF16741_low_34
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 16911134 - 16910796
Alignment:
| Q |
9 |
agggtaccaggacgcggatccaccatgtctctatctgtggggtctgttaccacatagataggaccaccttttccaccagtagtcttccttccgaaacctt |
108 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16911134 |
agggtaccaggacgtggattcaccatgtcactatctgaggggtctgttaccacatagataggaccgccttttccaccagtagtcttccttccgaaacctt |
16911035 |
T |
|
| Q |
109 |
tcacacaatctgcaagcttctggcggttgtttgcccagttaggatcacacctccaacacctgtcaatggggtttgtagccatgcatggaccacgtgcttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16911034 |
tcacacaatctgcaagcttctggcggttgtttgcccagttaggatcacacctccaacacctgtcaatggggtttgtagccatgcatggaccacgtgcttt |
16910935 |
T |
|
| Q |
209 |
acccccggccaaattccttcttacttggttgccatttatcattctgtttgttaaaccaataaatattaaaatatgatagatcaccttataattaattcta |
308 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16910934 |
acccccggccaaattccttcttccttggttgccaattatcattctgtttgttaaaccaataaatattaaaatatgatagatcaccttataattaattcta |
16910835 |
T |
|
| Q |
309 |
tgagagatacaaagaaacatgtaacaatgatgtatgtgt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16910834 |
tgagagatacaaagaaacatgtaacaataatgtatgtgt |
16910796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 16915539 - 16915215
Alignment:
| Q |
9 |
agggtaccaggacgcggatccaccatgtctctatctgtggggtctgttaccacatagataggaccaccttttccaccagtagtcttccttccgaaacctt |
108 |
Q |
| |
|
|||||||||||||| |||| ||||| ||| ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
16915539 |
agggtaccaggacgtggattcaccaagtcactatctgaggggtcagttaccacatagataggaccgtcttttccaccagtagtcttccttccaaaacctt |
16915440 |
T |
|
| Q |
109 |
tcacacaatctgcaagcttctggcggttgtttgcccagttaggatcacacctccaacacctgtcaatggggtttgtagccatgcatggaccacgtgcttt |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| || | ||| |
|
|
| T |
16915439 |
gcacacaatctgcaagcttcttgcggttgtttgcccagttaggatcacacctccaacacctatcaatggggtttgtggccatgcatgaacta-ttgccca |
16915341 |
T |
|
| Q |
209 |
acccccggccaaattccttcttacttggttg---ccatttatcattctgtttgttaaaccaataaatattaaaatatgatagatcac-cttataattaat |
304 |
Q |
| |
|
||||| |||||||||||||| | | || ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16915340 |
acccc--accaaattccttcttccgttaatgccaccaattatcattctgtttgacaaaccaataaatattaaaatatgatagatcacacttataattaat |
16915243 |
T |
|
| Q |
305 |
tctatgagagatacaaagaaacatgtaa |
332 |
Q |
| |
|
||||||||||| |||||||| |||||| |
|
|
| T |
16915242 |
tctatgagagaagcaaagaaaaatgtaa |
16915215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 127 - 308
Target Start/End: Original strand, 1872756 - 1872931
Alignment:
| Q |
127 |
tctggcggttgtttgcccagttaggatcacacctccaacacctgtcaatggggtttgtagccatgcatggaccacgtgctttacccccggccaaattcct |
226 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1872756 |
tctggcggttgtttgcgcagttaggatcacacct---------gtcaatggggtttgtagccatgcatggaccacgtgctttacccccggccaaattcct |
1872846 |
T |
|
| Q |
227 |
tcttacttggttgccat---ttatcattctgtttgttaaaccaataaatattaaaatatgatagatcaccttataattaattcta |
308 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1872847 |
tcttccttggttgccgccgattatcattctgtttgttaaaccaataaatattaaaatatgatagatcaccttataattaattcta |
1872931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 1872673 - 1872758
Alignment:
| Q |
9 |
agggtaccaggacgcggatccaccatgtctctatctgtggggtctgttaccacatagataggaccaccttttcc-accagtagtct |
93 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
1872673 |
agggtaccaggacgtggattcaccatgtcactatctgaggggtctgttaccacatagataggaccgccttttccaaccagtagtct |
1872758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 1873976 - 1874024
Alignment:
| Q |
300 |
ttaattctatgagagatacaaagaaacatgtaacaatgatgtatgtgtt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1873976 |
ttaattctatgagagatacaaagaaacatataacaataatgtatgtgtt |
1874024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 25007554 - 25007653
Alignment:
| Q |
96 |
cttccgaaacctttcacacaatctgcaagcttctggcggttgtttgcccagttaggatcacacctccaacacctgtcaatggggtttgtagccatgcatg |
195 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||| ||||||||||| ||||| || || ||||||||||| || |||||||| || ||||| |||| ||||| |
|
|
| T |
25007554 |
cttccgaatccttggacacaatctgctagcttttggcggttgttagcccaatttgggtcacacctccagcatctgtcaataggatttgtggccaagcatg |
25007653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University