View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_low_36 (Length: 341)
Name: NF16741_low_36
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 15852628 - 15852312
Alignment:
| Q |
11 |
gatgaaagaaattgaaagagacatccgtgatttacttgagggaatcattagaaaacgtgaaaaagaactgaggaacggtgaaaccaccaatgacgattta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15852628 |
gatgaaagaaattgaaagagacatccgtgatttacttgagggaatcattagaaaacgtgaaaaagaactgaggaacggtgaaaccaccaatgacgattta |
15852529 |
T |
|
| Q |
111 |
ctaggcatacttttgcaatcaaatcatgccgaaaatcaaggacatcgaaatagtaagagtattggaatgaccactcaagaagtgatcgatgaatgcaaat |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15852528 |
ctaggcatgcttttgcaatcaaatcatgccgaaaatcaaggacatggaaatagtaagagtattggaatgaccactcaagaagtgatcgatgaatgcaaat |
15852429 |
T |
|
| Q |
211 |
tgttttacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcagga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15852428 |
tgttttacttggcagggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcagga |
15852329 |
T |
|
| Q |
311 |
agttttgcaagtttttg |
327 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
15852328 |
agttttgcaagtttttg |
15852312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 15845421 - 15845105
Alignment:
| Q |
11 |
gatgaaagaaattgaaagagacatccgtgatttacttgagggaatcattagaaaacgtgaaaaagaactgaggaacggtgaaaccaccaatgacgattta |
110 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |||||||||||||||| |||||| ||| ||| ||||| ||| |||||| |||||||||| |||||| |
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|
| T |
15845421 |
gatgaaagagattgaaagagatatccgtgattcacttgagggaatcattgaaaaacgagaagaagcactgaagaatggtgaagccaccaatgatgattta |
15845322 |
T |
|
| Q |
111 |
ctaggcatacttttgcaatcaaatcatgccgaaaatcaaggacatcgaaatagtaagagtattggaatgaccactcaagaagtgatcgatgaatgcaaat |
210 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||| || || ||||| ||||||||||||| |
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|
| T |
15845321 |
ttaggcattcttttgcaatcaaatcatgccgaaaaacaaggacatggaaatagtaagaatattgggatgaccacccatgatgtgatagatgaatgcaaat |
15845222 |
T |
|
| Q |
211 |
tgttttacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcagga |
310 |
Q |
| |
|
|||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15845221 |
tgttttaccttgctgggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcagga |
15845122 |
T |
|
| Q |
311 |
agttttgcaagtttttg |
327 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
15845121 |
agttttgcaagtttttg |
15845105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 15859616 - 15859299
Alignment:
| Q |
10 |
agatgaaagaaattgaaagagacatccgtgatttacttgagggaatcattagaaaacgtgaaaaagaactgaggaacggtgaaaccaccaatgacgattt |
109 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||| |||||||||||||||| |||||| ||||||| ||||| ||| ||||||||||||||||||||||| |
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|
| T |
15859616 |
agatgaaagaaattgatagagaaatccatgattcacttgagggaatcattgaaaaacgagaaaaagcactgaagaatggtgaaaccaccaatgacgattt |
15859517 |
T |
|
| Q |
110 |
actaggcatacttttgcaatcaaatcatgccgaaaatcaaggacatcgaaatagtaagagtattggaatgaccactcaagaagtgatcgatgaatgcaaa |
209 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||| ||||| ||||| |||||||||||| |
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|
| T |
15859516 |
attaggcattcttttgcaatcaaatcatgccgaaaaacaaggacatggaaatagtaagaatattgggatgaccacccaagatgtgatagatgaatgcaaa |
15859417 |
T |
|
| Q |
210 |
ttgttttacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcagg |
309 |
Q |
| |
|
||||||||| | || ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
15859416 |
ttgttttaccttgctgggcaagagacgacttaaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagcacgtgcaagggagg |
15859317 |
T |
|
| Q |
310 |
aagttttgcaagtttttg |
327 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15859316 |
aagttttgcaagtttttg |
15859299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 15866322 - 15866005
Alignment:
| Q |
10 |
agatgaaagaaattgaaagagacatccgtgatttacttgagggaatcattagaaaacgtgaaaaagaactgaggaacggtgaaaccaccaatgacgattt |
109 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||| |||||||||||||||| ||| || ||||||| ||||| ||| |||||| |||||||||||||||| |
|
|
| T |
15866322 |
agatgaaagaaattgatagagaaatccatgattcacttgagggaatcattgaaaagcgagaaaaagcactgaagaatggtgaacccaccaatgacgattt |
15866223 |
T |
|
| Q |
110 |
actaggcatacttttgcaatcaaatcatgccgaaaatcaaggacatcgaaatagtaagagtattggaatgaccactcaagaagtgatcgatgaatgcaaa |
209 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
15866222 |
attaggcattcttttgcaatcaaatcatgccgaaaaacaaggacatggaaatagtaagagtaatgggatgaccacccaagatgtgatagatgaatgcaaa |
15866123 |
T |
|
| Q |
210 |
ttgttttacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcagg |
309 |
Q |
| |
|
||||||||| | || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
15866122 |
ttgttttacattgctgggcaagagaccacctcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagcacgtgcaaggcagg |
15866023 |
T |
|
| Q |
310 |
aagttttgcaagtttttg |
327 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15866022 |
aagttttgcaagtttttg |
15866005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 30424895 - 30425006
Alignment:
| Q |
216 |
tacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttt |
315 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||| ||||||||| ||||||| || | ||||| ||||| |||||||||||||||||| | ||||| | |
|
|
| T |
30424895 |
tactttgcaggccaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtat |
30424994 |
T |
|
| Q |
316 |
tgcaagtttttg |
327 |
Q |
| |
|
| |||||||||| |
|
|
| T |
30424995 |
tacaagtttttg |
30425006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 23783869 - 23783778
Alignment:
| Q |
222 |
gcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagt |
313 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||| ||||||| || | ||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
23783869 |
gcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcaaggaaggaagt |
23783778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 322
Target Start/End: Original strand, 30475956 - 30476062
Alignment:
| Q |
216 |
tacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttt |
315 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |||||| || || |||| || | ||||||||||| ||||||| ||||||||| ||||||| | |
|
|
| T |
30475956 |
tactttgcagggcaagagaccacttctgttttgcttgtttgggcaatgatgttgttgagtaggtatcctgattggcaagctcgtgcaagggaggaagtat |
30476055 |
T |
|
| Q |
316 |
tgcaagt |
322 |
Q |
| |
|
||||||| |
|
|
| T |
30476056 |
tgcaagt |
30476062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 30430928 - 30431039
Alignment:
| Q |
216 |
tacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaaggcaggaagttt |
315 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||| ||||||||| ||||||| || | ||||| || || |||||||||||||||||| | ||||| | |
|
|
| T |
30430928 |
tactttgcaggacaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaaccagattggcaagaacgtgcaagggaagaagtat |
30431027 |
T |
|
| Q |
316 |
tgcaagtttttg |
327 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
30431028 |
tacaagtatttg |
30431039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 8379706 - 8379594
Alignment:
| Q |
201 |
gaatgcaaattgttttacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtg |
300 |
Q |
| |
|
|||||||| || || ||||||||||||||||| | ||||||| | |||| ||||||||| || | || || | ||||| ||||| ||||||||||||| |
|
|
| T |
8379706 |
gaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtg |
8379607 |
T |
|
| Q |
301 |
caaggcaggaagt |
313 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
8379606 |
ctagggaggaagt |
8379594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 30468994 - 30469083
Alignment:
| Q |
216 |
tacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtgcaagg |
305 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||| ||||||||| |||||||||| | ||||| || || ||||||| ||||||||| |
|
|
| T |
30468994 |
tactttgcaggccaagagaccacttctgttttgcttgtttggacaatggtgttattgagtaggtaccccgattggcaagcgcgtgcaagg |
30469083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 41627934 - 41627822
Alignment:
| Q |
201 |
gaatgcaaattgttttacttggcagggcaagagaccacttcaagtttgctggtttggacagtggtgttattaggcaggtatcctgaatggcaagaacgtg |
300 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||| ||||||| ||| || ||||||||| |||| ||||| | ||||| ||||| ||||||| | | | |
|
|
| T |
41627934 |
gaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaagcaaggg |
41627835 |
T |
|
| Q |
301 |
caaggcaggaagt |
313 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
41627834 |
caagggaggaagt |
41627822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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