View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_40 (Length: 327)
Name: NF16741_low_40
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 14246513 - 14246203
Alignment:
| Q |
1 |
caacactcgtgatgcaaaggagatagacaacatagcgcttgtttgtgtcggcagttatttgatctacttctattaattagagttttggagaatttacagc |
100 |
Q |
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| T |
14246513 |
caacactcgtgatgcaaaggagatagacaacatagcgcttgtttgtgtcggcaactatttgatctacttctattaattagagttttggagaatttacagc |
14246414 |
T |
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| Q |
101 |
tcagcggacattggcacacgaaaaatacaatcaacccacataaccaaacatgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactg |
200 |
Q |
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| T |
14246413 |
tcagcggacattggcacacgaaaaatacaatcaactcacataaccaaacatgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactg |
14246314 |
T |
|
| Q |
201 |
atgcacaaacataaatggggcaaacctcgtaattgtcgtattcaaggtgagtaagaaaactcaacccattacgggttcatgattcccacaaatagcattg |
300 |
Q |
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| T |
14246313 |
atgcacaaacataaatggggcaaacatcgtaattgtcgtattcaaggtgagtaagaaaactcaacccattacgggttcatgattcccacaaatagcattg |
14246214 |
T |
|
| Q |
301 |
acaattgaatc |
311 |
Q |
| |
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||||||||||| |
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| T |
14246213 |
acaattgaatc |
14246203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 14379741 - 14380039
Alignment:
| Q |
12 |
atgcaaaggagatagacaacatagcgcttgtttgtgtcggcagttatttgatctacttctattaattagagttttggagaatttacagctcagcggacat |
111 |
Q |
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||||| |||||||||||| |||| |||||||||| | ||| ||||||| | ||||||| ||||||||||||||| |||||||| |||| | || | |
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| T |
14379741 |
atgcagaggagatagacatcataacgcttgtttgatgcagcaactatttgaccaacttctactaattagagttttggtcaatttacaactcaacaaactt |
14379840 |
T |
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| Q |
112 |
tggcacacgaaaaatacaatcaacccacataaccaaacatgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaaca |
211 |
Q |
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| T |
14379841 |
cgg-atgcgagaaataaaatcaacctatataaccaaacatgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaaca |
14379939 |
T |
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| Q |
212 |
taaatggggcaaacctcgtaattgtcgtattcaaggtgagtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatc |
311 |
Q |
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| T |
14379940 |
taaatggcgcaaacctcataattgttgtagtcaaggtgagtaagaaaactcaacccattagaggttcatgattcccacaaatagcattgacaattgaatc |
14380039 |
T |
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