View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_43 (Length: 315)
Name: NF16741_low_43
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 223359 - 223629
Alignment:
| Q |
17 |
gaacaaaaacaatgacaaagagactttgtagcacatgaacatttaaatatcattttataaaattaataataacatttgattgacatacacgcatgaatgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
223359 |
gaacaaaaacaatgacaaagagactttgtagcacatgaacatttaaatatcattttataaaattaataataacatttgattgacatgca--------tgc |
223450 |
T |
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| Q |
117 |
ataatagtacaaaacaagccagaaaaaacactagtatttgagacataaacatatataggcagaaaaacaattcaaaa-gaaagagacaaaaataaacata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
223451 |
ataatagtacaaaacaagccagaaaaaacactagtatttgagacataaacatatataggcagaaaaacaagtcaaaaagaaagagataaaaataaacata |
223550 |
T |
|
| Q |
216 |
ctatttgagtgtcatgaatgggtgagggaaggatggctttcataaaatgtttagaatctttctccggcgccggtggccg |
294 |
Q |
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| T |
223551 |
ctatttgagtgtcatgaatgggtgagggaaggatggctttcataaaatgtttagaatctttctccggcgccggtggccg |
223629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 68 - 294
Target Start/End: Original strand, 218198 - 218421
Alignment:
| Q |
68 |
attttataaaattaataataacatttgattgacatacacgcatgaatgcataatagtacaaaacaagccagaaaaaa-cactagtatttgagacataaac |
166 |
Q |
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| T |
218198 |
attttataaaattaataataacatttgattgacat----gcatgcatgcataatagtacaaaacaagccagaaaaaagcactagtatttgagacataaac |
218293 |
T |
|
| Q |
167 |
atatataggcagaaaaacaattcaaaagaaagagacaaaaataaacatactatttgagtgtcatgaatgggtgagggaaggatggctttcataaaatgtt |
266 |
Q |
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| T |
218294 |
atatataggcagaaaaacaactcaaaagaaagagacaaaaataaacatactaatttagtgtcatgaatggctgagggaaggatggctttcataaaatgtt |
218393 |
T |
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| Q |
267 |
tagaatctttctccggcgccggtggccg |
294 |
Q |
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| T |
218394 |
tagaatccttctccgccaccggtggccg |
218421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 225259 - 225301
Alignment:
| Q |
225 |
tgtcatgaatgggtgagggaaggatggctttcataaaatgttt |
267 |
Q |
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| T |
225259 |
tgtcatgaatgggtgagggaagtatggccttcttaaaatgttt |
225301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 212309 - 212354
Alignment:
| Q |
242 |
ggaaggatggctttcataaaatgtttagaatctttctccggcgccg |
287 |
Q |
| |
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||||| ||||||||||||||||| || ||||||||||||| ||||| |
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|
| T |
212309 |
ggaagtatggctttcataaaatgctttgaatctttctccgccgccg |
212354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 29839309 - 29839364
Alignment:
| Q |
229 |
atgaatgggtgagggaaggatggctttcataaaatgtttagaatctttctccggcg |
284 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || || |||||||||| |
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|
| T |
29839309 |
atgaatgggtgagggaagtatggctttcataaaatgttttgattccttctccggcg |
29839364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 3809295 - 3809374
Alignment:
| Q |
188 |
tcaaaagaaagagacaaaaataaacatactatttgagtgtcatgaatgggtgagggaaggatggctttcataaaatgttt |
267 |
Q |
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|||||||||||||| ||| |||| ||||| ||||||| |||||||||||||||||| |||||||||| ||||||||| |
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| T |
3809295 |
tcaaaagaaagagagaaaccgaaacttactaattgagtggcatgaatgggtgagggaattatggctttcagaaaatgttt |
3809374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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