View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_45 (Length: 300)
Name: NF16741_low_45
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 5983219 - 5982951
Alignment:
| Q |
19 |
gtacacacaaaataatctattttgtgattcttatgttcaagtgcttctctgcaaagtgtgcaaggttaatgaactctttatcatcaatgaaaccgtcgtg |
118 |
Q |
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| T |
5983219 |
gtacacacaaaataatctattttgtgattcttatgttcaagtgcttctctgcaaagtgcgcaaggttaatgaactctttatcatcaatgaaaccgtcgtg |
5983120 |
T |
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| Q |
119 |
gttggcatcgacggatttcaagaccttgttactcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgctgattcga |
218 |
Q |
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| T |
5983119 |
gttggcatcgacagatttcaagaccttgttactcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgctgattcga |
5983020 |
T |
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| Q |
219 |
ccatcaccatttgtgtcgaatgatgtctttaaccattgtttgaactgttgcaaagtaatcacacgcttc |
287 |
Q |
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| T |
5983019 |
ccgtcaccatttgtgtcgaatgatgtctttaaccattgtttgaactgttgcaaagtcatcacacgcttc |
5982951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 39 - 287
Target Start/End: Complemental strand, 5979427 - 5979179
Alignment:
| Q |
39 |
tttgtgattcttatgttcaagtgcttctctgcaaagtgtgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggcatcgacggatttca |
138 |
Q |
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| T |
5979427 |
tttgtgactcttatgttcaagtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttca |
5979328 |
T |
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| Q |
139 |
agaccttgttactcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgctgattcgaccatcaccatttgtgtcgaa |
238 |
Q |
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| T |
5979327 |
agaccttattgctcttccatgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgctgatgcgaccgtcaccatttgtgtcgaa |
5979228 |
T |
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| Q |
239 |
tgatgtctttaaccattgtttgaactgttgcaaagtaatcacacgcttc |
287 |
Q |
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| T |
5979227 |
tgatgtctttaaccattgcttgaactgttgcagagtcatcacacgcttc |
5979179 |
T |
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