View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_46 (Length: 298)
Name: NF16741_low_46
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 3076289 - 3076565
Alignment:
| Q |
9 |
agcataggatctatgaaattgagaattagagagaagtaagtaaaataacaagagaaataacacacaagatttacgtggaaaactcctcaatatgagaagt |
108 |
Q |
| |
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|||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
3076289 |
agcacaggatcaatgaaattgagaattaaagagaagtaagtaaaataacaagagaaataacacacaagatttacatggaaaactcctaaatatgagaagt |
3076388 |
T |
|
| Q |
109 |
aaaaaaccacgggcgatcgagagcaaagttccactatgtnnnnnnnn-gagtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctct |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
3076389 |
aaaaaaccacgggcgattgagagcaaagttccactatataaaagaaaagagtacaacaagtcttcttatagtgatgaggacaaatgacaaaattttctct |
3076488 |
T |
|
| Q |
208 |
caatatctcctaaaatactctctaaaatggaacaagaattctcactaaaaatacactcaagtgtatgttacaaagtg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3076489 |
caatatctcctaaaatactctctaaaatggaacaagaattcttactaaaaatacactcaagtgtatgttacaaagtg |
3076565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 3072776 - 3073040
Alignment:
| Q |
9 |
agcataggatctatgaaattgagaattagagagaagtaagtaaaataacaagagaaataacacacaagatttacgtggaaaactcctcaatatgagaagt |
108 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3072776 |
agcacaggatctatgaaattgagaattaaagagaagtaagtaaaataaca------------cacaagatttacgtggaaaactcctcaatatgagaagt |
3072863 |
T |
|
| Q |
109 |
aaaaaaccacgggcgatcgagagcaaagttccactatgtnnnnnnnn-gagtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3072864 |
aaaaaaccacgggcgatcgagagcaaagttccactatgtaaaagaaaagagtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctct |
3072963 |
T |
|
| Q |
208 |
caatatctcctaaaatactctctaaaatggaacaagaattctcactaaaaatacactcaagtgtatgttacaaagtg |
284 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3072964 |
caatatctcctaaaatactctcgaaaatggaacaagaattctcactaaaaatacactcaagtgtatgttacaaagtg |
3073040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 29471040 - 29470771
Alignment:
| Q |
16 |
gatctatgaaattgagaattagagagaagtaagtaaaataacaagagaaataacacacaagatttacgtggaaaactcctcaatatgagaagtaaaaaac |
115 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
29471040 |
gatcgatgaaattgagaattaaagagaagtaagtaaaataacaagagaaaaaacacacaagatttacatggaaaactcctcaatatgagaactaaaaaac |
29470941 |
T |
|
| Q |
116 |
cacgggcgatcgagagcaaagttccactatgt-nnnnnnnngagtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctctcaatatc |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
29470940 |
cacgggcgatcaagagcaaagttccactatgtaaaagaaaagagtatagcaagtcctcttatagtaatgaggacaaaggacaatattttctctcaatatc |
29470841 |
T |
|
| Q |
215 |
tcctaaaatactctctaaaatggaacaagaattctcactaaaaatacactcaagtgtatgttacaaagtg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
29470840 |
tcctaaaatactctctaaaatggaacaagaattctcaccaaaaatacacttaagtgtatgttacaaagtg |
29470771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 15114214 - 15113961
Alignment:
| Q |
26 |
attgagaattagagagaagtaagtaaaataacaagagaaataacacacaagatttacgtggaaaactcctcaatatgagaagtaaaaaaccacgggcgat |
125 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15114214 |
attgagaattaaagagaagtaagtaaaataacaagagaaataacacacaagatttacgtgga------ctcaatatgagaagtaaaaaaccacgggcgat |
15114121 |
T |
|
| Q |
126 |
cgagagcaaagttccactatgtnnnnnnnn-gagtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctctcaatatctcctaaaata |
224 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
15114120 |
cacgagcaaagttccactatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaggacaatattttctcccaatatctcctaaaata |
15114021 |
T |
|
| Q |
225 |
ctctctaaaatggaacaagaattctcactaaaaatacactcaagtgtatgttacaaagtg |
284 |
Q |
| |
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|||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
15114020 |
ctctctcaaatggaacaagaattctcaccaaaagtacactcaagtgtatgttacaaagtg |
15113961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 8564836 - 8565096
Alignment:
| Q |
26 |
attgagaattagagagaagtaagtaaaataacaagagaaat-aacacacaagatttacgtggaaaactcctcaatatgagaagtaaaaaaccacgggcga |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
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|
| T |
8564836 |
attgagaattaaagagaagtaagtaaaataacaagagaaattaacacacaagatttacgttgaaaactcctcaatatgagaagtaaaaaaccatggacgg |
8564935 |
T |
|
| Q |
125 |
tcgagagcaaagttccactatgtnnnnnnnn-gagtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctctcaatatctcctaaaat |
223 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||| |
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|
| T |
8564936 |
tcacgaataaagttccactatgtaaaagaaaagagtacaacaagtcctcttatagtgatgaggacaaaggataatattttcactcaatatttcctaaaat |
8565035 |
T |
|
| Q |
224 |
actctctaaaatggaacaagaattctcactaaaaatacactcaagtgtatgttacaaagtg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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|
| T |
8565036 |
actctctaaaatggaacaagaattctcacaaaaaatacacccaagtgtatgttacaaagtg |
8565096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 15241513 - 15241787
Alignment:
| Q |
9 |
agcataggatctatgaaattgagaattagagagaagtaagtaaaataacaagagaaataacacacaagatttacgtggaaaactcctcaatatgagaagt |
108 |
Q |
| |
|
|||| |||||| ||| |||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15241513 |
agcacaggatcgatgcaattgagaatcaaagagaagtaagtaaaataataagagaaataacacacaagatttacgtggaaaactcctcaatatgagaag- |
15241611 |
T |
|
| Q |
109 |
aaaaaaccacgggcgatcgagagcaaagttccactatgtnnnnnnnnga-gtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctct |
207 |
Q |
| |
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|||||||| ||| | || ||||||||||||||||||| | |||||| || ||||||| |||| ||||||||||||||||| ||||||||| |
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|
| T |
15241612 |
-aaaaaccatgggtggtcacgagcaaagttccactatgtaaaagaaaaaagtacaataaatcctcttgtagtaatgaggacaaaggacaatattttctct |
15241710 |
T |
|
| Q |
208 |
caatatctcctaaaatactctctaaaatggaacaagaattctcactaaaaatacactcaagtgtatgttacaaagtg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
15241711 |
taatatctcctaaaatactctctaaaatggaacaagaattctcacaaaaaatacactcaagtgtatgttacaaagtg |
15241787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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