View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_5 (Length: 677)
Name: NF16741_low_5
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 648768 - 649374
Alignment:
| Q |
18 |
aattgcaccatgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggacttcttatctcttgtgcaggggaaagatgggtgctt |
117 |
Q |
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| T |
648768 |
aattgcaccatgccttttatgatttgtctgtttgcatattccactggcttctcttgattctggacttcttatctcttgtgcaggggaaagatgggtgctt |
648867 |
T |
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| Q |
118 |
cccttcaccgacaatcaaaatcacaggctattggaggaaaaccgccatacttaatggtattcttcattttcgtgccttttcacccttcaattatcgttga |
217 |
Q |
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| T |
648868 |
cccttcaccgacaatcaaaatcacaggctattggaggaaaaccgccatacttaatggtattcttcattttcgtgcctgttcacccttcaattatcgttga |
648967 |
T |
|
| Q |
218 |
acatgcttgttgtaacatgcctaatagaagtatttgaagctataatagcttaccttcattaaaaaatannnnnnnnnnnnngttgaacacgtttgttgta |
317 |
Q |
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| T |
648968 |
acatgcttgttgtaacatgcctaatagaagtatttgaagctataatagcttaccttcattaaaaaatatttttttatttttgttgaacacgtttgttgta |
649067 |
T |
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| Q |
318 |
acgtgctcaaataggataagcattttaagctagaggagcatacctgcataaatcatatcttggtgactggaagtatttcctttatctaaacttctagtaa |
417 |
Q |
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| T |
649068 |
acgtgctcaaataggataagcattttaagctagaagagcatacctgcataaatcatatcttggtgactggaagtatttcctttatctaaacttctagtaa |
649167 |
T |
|
| Q |
418 |
cacattgctgtttgtgatgcttataaacagaaattttaaaattatggtttgctttgttgtattgattgtgatgtgcagccttgttttggaatgtttggat |
517 |
Q |
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| T |
649168 |
cacattgctgtttgtgatgcttataaacagaaattttaaaattatggtttgctttgttgtattgattgtgatgtgcagccttgttttggaatgtttggat |
649267 |
T |
|
| Q |
518 |
atgggggacctatagcatctatgcatctggggaggtatgannnnnnnaagataaatctacttctgtcttattctgttcaagtacatcccaaaatttatct |
617 |
Q |
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| T |
649268 |
atgggggacctatagcatctatgcatctggggaggtatgatttttttaagataaatctacttctgtcttattctgttcaag--catcccaaaatttatct |
649365 |
T |
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| Q |
618 |
ctttatgaa |
626 |
Q |
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||||||||| |
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| T |
649366 |
ctttatgaa |
649374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 305 - 443
Target Start/End: Complemental strand, 239089 - 238951
Alignment:
| Q |
305 |
cacgtttgttgtaacgtgctcaaataggataagcattttaagctagaggagcatacctgcataaatcatatcttggtgactggaagtatttcctttatct |
404 |
Q |
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| T |
239089 |
cacgtttgttgtaacatgctcaaataggataagcaatttaagctagaagagcatccctgcataaatcatatcttggtaactggaaatatttcctttatct |
238990 |
T |
|
| Q |
405 |
aaacttctagtaacacattgctgtttgtgatgcttataa |
443 |
Q |
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|||||| ||||||||||||| ||| |||||||||||||| |
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| T |
238989 |
aaacttatagtaacacattgttgtgtgtgatgcttataa |
238951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 686177 - 686334
Alignment:
| Q |
30 |
ccttttatgatttgtctgtttgcatattccactggcttctcttgattctggacttcttatctcttgtgcaggggaaagatgggtgcttcccttcaccgac |
129 |
Q |
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||||||||| ||| ||||||||||||||| |||| | |||||||||| ||||||| ||||||||||| ||||||||| ||||| || || ||||||||| |
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| T |
686177 |
ccttttatggtttatctgtttgcatattcaactgccgtctcttgattatggactttttatctcttgttcaggggaaaaatgggagcgtcacttcaccgat |
686276 |
T |
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| Q |
130 |
aatcaaaatcacaggctattggaggaaaaccgccatacttaatggtattcttcatttt |
187 |
Q |
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| T |
686277 |
tatcaaaatcacaggctattgggggaaaacccccatacttaatggtattcttcatttt |
686334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 451 - 556
Target Start/End: Original strand, 686453 - 686558
Alignment:
| Q |
451 |
ttttaaaattatggtttgctttgttgtattgattgtgatgtgcagccttgttttggaatgtttggatatgggggacctatagcatctatgcatctgggga |
550 |
Q |
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|||||| ||||| |||||||||| ||| ||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |||||| |
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| T |
686453 |
ttttaagattattgtttgctttgctgtgttggttgtgctgtgcagccttattttggaatgtatggatatggtggacctatagcatctatgcatttgggga |
686552 |
T |
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| Q |
551 |
ggtatg |
556 |
Q |
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|||||| |
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| T |
686553 |
ggtatg |
686558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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