View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_51 (Length: 287)
Name: NF16741_low_51
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 37 - 267
Target Start/End: Complemental strand, 30441900 - 30441670
Alignment:
| Q |
37 |
agaatcgtgttgtggttgctgaatgcggtggctggccgacgtggttaggcgattcaacggtgttctttcacagaatcgccgatgacggttggtggagcat |
136 |
Q |
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| T |
30441900 |
agaatcgtgttgtggttgctgaatgcggtggctggccgacgtggttaggcaattcaacggtgttctttcacagaatcgccgatgatggttggtggagcat |
30441801 |
T |
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| Q |
137 |
ttttcaagtcgacttacaggattcgaatcttatcggaattcaatcctcaccaattcgcatcactccatcgggattacactgtttcactcccttcgcaatc |
236 |
Q |
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||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
30441800 |
tttccgagtcgatttacaggattcgaatcttaccggaattcaatcctcaccaattcgcatcaccccaccgggattacactgtttcactcccgtcgcaatc |
30441701 |
T |
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| Q |
237 |
caaaaaagcaaccgcatcgccgtcgcttctc |
267 |
Q |
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|||| |||||||||||||||||| |||||| |
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| T |
30441700 |
caaatcagcaaccgcatcgccgtcccttctc |
30441670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 13057926 - 13058075
Alignment:
| Q |
119 |
tgacggttggtggagcatttttcaagtcgacttacaggattcgaatcttatcggaattcaatcctcaccaattcgcatcactccatcgggattacactgt |
218 |
Q |
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| T |
13057926 |
tgacggttggtggagcattttctgagttgatttacaggattcgaatcttaccggaattcaatcctcacga-ttcacatcattccaccgggattacactgt |
13058024 |
T |
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| Q |
219 |
ttcactcccttcgcaatccaaaaaagcaaccgcatcgccgtcgcttctcgt |
269 |
Q |
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| T |
13058025 |
ttcattcccgtcgcaatccaaaacagcaaccacatcgccgtcgcttctcgt |
13058075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 119 - 267
Target Start/End: Original strand, 13040504 - 13040651
Alignment:
| Q |
119 |
tgacggttggtggagcatttttcaagtcgacttacaggattcgaatcttatcggaattcaatcctcaccaattcgcatcactccatcgggattacactgt |
218 |
Q |
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| T |
13040504 |
tgacggttggtggagcattttccgagttgatttacaggattcgaatcttaccggaattcaatcgtcacc-attcgcatcactccaccgggattacactat |
13040602 |
T |
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| Q |
219 |
ttcactcccttcgcaatccaaaaaagcaaccgcatcgccgtcgcttctc |
267 |
Q |
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|||| | | ||||||||||||| ||||||| ||||||||| ||||||| |
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| T |
13040603 |
ttcatttctgtcgcaatccaaaacagcaaccacatcgccgttgcttctc |
13040651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 11321384 - 11321149
Alignment:
| Q |
27 |
tctgttccggagaatcgtgttgtggttgctgaatgcggtggctggccgacgtggttaggcgattcaacggtgttctttcacagaatcgccgatgacggtt |
126 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
11321384 |
tctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgatgacggtt |
11321285 |
T |
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| Q |
127 |
ggtggagcatttttcaagtcgacttacaggattcgaatcttatcggaattcaatcctcaccaattcgcatcactccatcgggattacactgtttcactcc |
226 |
Q |
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| T |
11321284 |
ggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcctcacctattcgtatcactccaccgggattacactgtttcactcc |
11321185 |
T |
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| Q |
227 |
cttcgcaatccaaaaaagcaaccgcatcgccgtcgc |
262 |
Q |
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| T |
11321184 |
cgccgcaattcaaaatagcaaccgcatcgccgtcgc |
11321149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 11479405 - 11479170
Alignment:
| Q |
27 |
tctgttccggagaatcgtgttgtggttgctgaatgcggtggctggccgacgtggttaggcgattcaacggtgttctttcacagaatcgccgatgacggtt |
126 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| |
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| T |
11479405 |
tctgtgccggagaatcgtgttgtggttgctgaacgcggtggctggccgacgtggttgggagattcaacggtgttcttccacagaatcgccgatgacggtt |
11479306 |
T |
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| Q |
127 |
ggtggagcatttttcaagtcgacttacaggattcgaatcttatcggaattcaatcctcaccaattcgcatcactccatcgggattacactgtttcactcc |
226 |
Q |
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| T |
11479305 |
ggtggagcattttccgagccgatttaaaggattctaatcttaccggaattcaatcctcacctattcgtatcactccaccgggattacactgtttcactcc |
11479206 |
T |
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| Q |
227 |
cttcgcaatccaaaaaagcaaccgcatcgccgtcgc |
262 |
Q |
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| T |
11479205 |
cgccgcaattcaaaatagcaaccgcatcgccgtcgc |
11479170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 11459990 - 11459873
Alignment:
| Q |
24 |
gaatctgttccggagaatcgtgttgtggttgctgaatgcggtggctggccgacgtggttaggcgattcaacggtgttctttcacagaatcgccgatgacg |
123 |
Q |
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|||||||| |||||||| ||||||||||| ||| ||||||| |||||||||||||| || |||||||| ||||||| |||| ||||||||| |||| |
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| T |
11459990 |
gaatctgtcccggagaaccgtgttgtggtgagcgaacgcggtggttggccgacgtggttgggtgattcaacattgttcttccacaaaatcgccgaagacg |
11459891 |
T |
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| Q |
124 |
gttggtggagcatttttc |
141 |
Q |
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||||||||||||| |||| |
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| T |
11459890 |
gttggtggagcatctttc |
11459873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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