View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_52 (Length: 276)
Name: NF16741_low_52
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_52 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 18725040 - 18725298
Alignment:
| Q |
18 |
aaaggcacatggaaaaaatgaagtatgcagaccattgaaacaatgtttcaactgtgaattaatggatctaaagacctgacattttgtcctctgcagtcat |
117 |
Q |
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| T |
18725040 |
aaaggcacatggaaaaaattaagtatgcagtccattgaagcaatgtttcaactgtgaattaatggatctaaagacctgacattttgtcctctgcagtcat |
18725139 |
T |
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| Q |
118 |
taatgaagctggaacattggagagaagatttaagaaattgaccatacaaatctatcaaagtatgtcatcgagaacttctatcatcaattctcgctatcgc |
217 |
Q |
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| T |
18725140 |
taatgaagctggaacattagagagaagatttaagaaattgaccataaaaatctatcaaagtatgtcatcgagaacttctatcatcaattctcgctatcgc |
18725239 |
T |
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| Q |
218 |
agaaccaaacacacgctatatcttttacgaaataagcatgagttaaccatcaatgagtc |
276 |
Q |
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| T |
18725240 |
agaaccaaacacacgctatatcttttacgaaataagcatgagttaaccatcaatgagtc |
18725298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 6361382 - 6361424
Alignment:
| Q |
98 |
attttgtcctctgcagtcattaatgaagctggaacattggaga |
140 |
Q |
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| T |
6361382 |
attttgtcctctgcagtcattaatgaagctggaatattggaga |
6361424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 32856783 - 32856703
Alignment:
| Q |
68 |
actgtgaattaatggatctaaagacctgacattttgtcctctgcagtcattaatgaagctggaacattggagagaagattta |
149 |
Q |
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| T |
32856783 |
actgtgaattaatgaatataaagaccggatatttta-cctctgcagtcattaatgaagctggaatattggagagaagcttta |
32856703 |
T |
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