View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_57 (Length: 265)
Name: NF16741_low_57
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 6486367 - 6486605
Alignment:
| Q |
9 |
gacatcatcattggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacatttta |
108 |
Q |
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| T |
6486367 |
gacatcatcattggtgagccctcaccacttaatctgaattccaaatttcaaattaattataagttagcaacgattaattttaggatacaataacatttta |
6486466 |
T |
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| Q |
109 |
tttagatttggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaatggttctgcagcgaactgcaccatgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6486467 |
tttagatttggattctctgtatggtgcagcacattgcagagccgtttgtgaactcaaattcagtttacatcaaacggttctgcagcgaactgcaccatgt |
6486566 |
T |
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| Q |
209 |
tcatgcaaagaatccaaatagctcgtctagtgagctaag |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6486567 |
acatgcaaagaatccaaatagctcgtctagtgagctaag |
6486605 |
T |
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