View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_59 (Length: 264)
Name: NF16741_low_59
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 34690453 - 34690219
Alignment:
| Q |
15 |
attattctccctcatcaataacagcaccttgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcatnnnnnnnntt |
114 |
Q |
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| T |
34690453 |
attattctccctcatcaataacagcaccttgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcataaaaaaaatt |
34690354 |
T |
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| Q |
115 |
gtagaacaaacttactcaaacagggtcttatgacttcattcatgacttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggatt |
214 |
Q |
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| T |
34690353 |
gtagaacaaacttactcaaacagggtcttatgacttcattcatgacttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggatt |
34690254 |
T |
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| Q |
215 |
cgatttaaagatttgaacacaagaaccaatttaat |
249 |
Q |
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| T |
34690253 |
cgatttaaagatttgaacacaagaaccaatttaat |
34690219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 16728740 - 16728652
Alignment:
| Q |
161 |
ttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaacacaagaaccaatttaat |
249 |
Q |
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| T |
16728740 |
ttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaacacaagaacaaatttaat |
16728652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 26988377 - 26988220
Alignment:
| Q |
15 |
attattctccctcatcaataacagcaccttgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcatnnnnnnnntt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26988377 |
attattctccctcatcaataacagcaccttgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcataaaaaaaatt |
26988278 |
T |
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| Q |
115 |
gtagaacaaacttactcaaacagggtcttatgacttcattcatgacttaaaatgtagt |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26988277 |
gtagaacaaacttactcaaacagggtcttatgacttcattcatgacttaaaatttagt |
26988220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 26988214 - 26988166
Alignment:
| Q |
201 |
ccgtgttatggattcgatttaaagatttgaacacaagaaccaatttaat |
249 |
Q |
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| T |
26988214 |
ccgtgttatggattcgattcaaagatttgaacacaagaacaaatttaat |
26988166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 27076878 - 27076912
Alignment:
| Q |
173 |
gggaactttgtaagtccatagggaattaccgtgtt |
207 |
Q |
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| T |
27076878 |
gggaactttgcaagtccatagggaattaccgtgtt |
27076912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 30230570 - 30230525
Alignment:
| Q |
204 |
tgttatggattcgatttaaagatttgaacacaagaaccaatttaat |
249 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
30230570 |
tgttatggattcgatttaaagatttgaacacaagaccaaatttaat |
30230525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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