View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_6 (Length: 639)
Name: NF16741_low_6
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 63 - 391
Target Start/End: Original strand, 38554342 - 38554667
Alignment:
| Q |
63 |
cccagtaatgggattgaagggaattgtaaaaatggaacacgttcaacaaaagaatttatgggttagaggcatttatctcaaacagtggcgaaatgaaaga |
162 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||| | |||||| |||| |||||||||| |||||| |||||||||||||||||||||| | |
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| T |
38554342 |
cccagtaatgggattgaagagaattggaaaaatggaacacgtttagcaaaaggatttgtgggttagagtcatttacctcaaacagtggcgaaatgaaata |
38554441 |
T |
|
| Q |
163 |
tctttattttcctttctacttgttgtggtttaattcactaggatttaaaattgtgatgtataattcggtaacgcttgatctgaaatttttgaatctaact |
262 |
Q |
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| ||| ||||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||| | |||||||| | |
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| T |
38554442 |
tatttcttttcctttctacttgt---ggtttaattcacaaggatttgaagttgtgatgtataattcggtaatgcttgatctgaaattatcgaatctaatt |
38554538 |
T |
|
| Q |
263 |
ttgagggaaaattcatcgctctgttacagtgacaataaatagattaatgggtttgtttatgaatttgaatgttgctgaattgtttatgggcttgtttatt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
38554539 |
ttgagggaaaattcatcgctctgttacagtgacaataaatagattactgggtttgtttatgaatttgaatgttgctgaattatttatgggtttgtttatt |
38554638 |
T |
|
| Q |
363 |
aattttaattttgctgttgttgttgagac |
391 |
Q |
| |
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||||| ||||||| ||||||||||||||| |
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| T |
38554639 |
aatttgaattttgttgttgttgttgagac |
38554667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 441 - 621
Target Start/End: Original strand, 31803424 - 31803604
Alignment:
| Q |
441 |
gtgacaattgggaacgtatagcttgtgtgtatcattgagtaagcagtacacataaacacatcaaagtgactgaaagtgaggttttctatcatcttagcaa |
540 |
Q |
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|||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31803424 |
gtgacaattgggaacgcatagcttgtgtatgtcattgtgtaagcagtacacataaacacatcaaagtgactgaaagtgaggttttctatcatcctagcaa |
31803523 |
T |
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| Q |
541 |
caagaaaactccaagctcatgtgatgttctttagtctattataatgaacatattgataaacatgctttggaatgacccaac |
621 |
Q |
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| T |
31803524 |
caagaaaattccaagctcatgtgatgtgctttagtctattatagtgaacacattgataaacatgctttggaatgacccaac |
31803604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 435 - 621
Target Start/End: Original strand, 38554672 - 38554858
Alignment:
| Q |
435 |
agagaagtgacaattgggaacgtatagcttgtgtgtatcattgagtaagcagtacacataaacacatcaaagtgactgaaagtgaggttttctatcatct |
534 |
Q |
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||||||||||||||| |||||||||| | || | || |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| | |
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| T |
38554672 |
agagaagtgacaattaggaacgtataacatgcgcgtgtcattgagtaagcagtgtacataaacacataaaagtgactgaaagtgaggttttccatcatat |
38554771 |
T |
|
| Q |
535 |
tagcaacaagaaaactccaagctcatgtgatgttctttagtctattataatgaacatattgataaacatgctttggaatgacccaac |
621 |
Q |
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| T |
38554772 |
tagcaacaagaaaactccaagctcgtgtgatgtgctttagtctattatagtgaacacattgattaacatgctttggaatgacccaac |
38554858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 63 - 391
Target Start/End: Complemental strand, 224281 - 223951
Alignment:
| Q |
63 |
cccagtaatgggattgaagggaattgtaaaaatggaacacgttcaacaaaagaatttatgggttagaggcatttatctcaaacagtggcgaaatgaaaga |
162 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| | |||||| || | |||||||||| |||||| |||||||||||||||||||||| | |
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| T |
224281 |
cccagtaatgggattgaagagaattgaaaaaatggaacacgtttagcaaaaggatctgtgggttagagtcatttacctcaaacagtggcgaaatgaaata |
224182 |
T |
|
| Q |
163 |
tctttattttcctttctacttgttgtggtttaattcactaggatttaaaattgtgatgtata--attcggtaacgcttgatctgaaatttttgaatctaa |
260 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||||||||| ||||||||||||||| | |||||||| |
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| T |
224181 |
tctttcttttcctttctacttgttgtggtttaattcacaaggattagaagttgtgatgtatataattcggtaatgcttgatctgaaattatcgaatctaa |
224082 |
T |
|
| Q |
261 |
ctttgagggaaaattcatcgctctgttacagtgacaataaatagattaatgggtttgtttatgaatttgaatgttgctgaattgtttatgggcttgttta |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
224081 |
ttttgagggaaaattcatcgctctgttacagtgacaataaatagattattgagtttgtttatgaatttgaatgttgctgaattatttatgggtttgttta |
223982 |
T |
|
| Q |
361 |
ttaattttaattttgctgttgttgttgagac |
391 |
Q |
| |
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||||||| ||||||| ||||||||||||||| |
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| T |
223981 |
ttaatttgaattttgttgttgttgttgagac |
223951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 435 - 621
Target Start/End: Complemental strand, 223946 - 223760
Alignment:
| Q |
435 |
agagaagtgacaattgggaacgtatagcttgtgtgtatcattgagtaagcagtacacataaacacatcaaagtgactgaaagtgaggttttctatcatct |
534 |
Q |
| |
|
||||||||||||||| |||||||||| | || |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| | |
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| T |
223946 |
agagaagtgacaattaggaacgtataacatgcgtgtgtcattgagtaagcagtgtacataaacacataaaagtgactgaaagtgaggttttccatcatat |
223847 |
T |
|
| Q |
535 |
tagcaacaagaaaactccaagctcatgtgatgttctttagtctattataatgaacatattgataaacatgctttggaatgacccaac |
621 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||||||||||| |
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| T |
223846 |
tagcaacaagaaaactccaagctcatgtgatgtgctttagtctattatagtgaacacattgattaacatgctttggaatgacccaac |
223760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 31619854 - 31619693
Alignment:
| Q |
64 |
ccagtaatgggattgaagggaattgtaaaaatggaacacgttcaacaaaagaatttatgggtt-agaggcatttatctcaaacagtggcgaaatgaaaga |
162 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||| |||| || | |||| | ||| |||||| |||| |||||| ||||||||||| |||||| ||||| |
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| T |
31619854 |
ccagtaatgggattgaaggaaataggaaaaatgaaaca--ttaagcaaacgggtttgtgggtttagagtcatttacctcaaacagtgacgaaataaaaga |
31619757 |
T |
|
| Q |
163 |
tctttattttcctttctacttgttgtggtttaattcactaggatttaaaattgtgatgtataat |
226 |
Q |
| |
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||||| | ||||||| |||| | |||| |||||||||||||||| || ||||| ||||||| |
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|
| T |
31619756 |
tctttctcttcctttgtactcaatatggtctaattcactaggatttgaagctgtgaagtataat |
31619693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 7311931 - 7311972
Alignment:
| Q |
309 |
atgggtttgtttatgaatttgaatgttgctgaattgtttatg |
350 |
Q |
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| T |
7311931 |
atgggtttgtttatgaatttgaatgttgctgaattttttatg |
7311972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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