View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16741_low_61 (Length: 261)
Name: NF16741_low_61
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_61 |
 | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 37)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 26143611 - 26143375
Alignment:
| Q |
4 |
aaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26143611 |
aaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttcttctattcgggactgtaatccaacagggtatttggctacatt |
26143512 |
T |
|
| Q |
104 |
tnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagatagataagttagaa |
203 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
26143511 |
taaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaata----agataaattagaa |
26143416 |
T |
|
| Q |
204 |
catacactaaaatcaaaatcacatccatgtattgagaatat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26143415 |
aatacactaaaatcaaaatcacatccatgtattgagaatat |
26143375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 25580468 - 25580232
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25580468 |
cataaagtcctaccatgtggaccacatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
25580369 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagatagataagtta |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
25580368 |
gtttaaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcgtgtccaata----agataagtta |
25580273 |
T |
|
| Q |
201 |
gaacatacactaaaatcaaaatcacatccatgtattgagaa |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25580272 |
gaacatacactaaaatcaaaatcacatccatgtattgagaa |
25580232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 25539289 - 25539050
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
25539289 |
cataaagtcctaccatgcggacctcatcctcagagcccaagtcaagaagcaatttcacttgttctattggggactgtaatccaacagggtatttggccac |
25539190 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagatagataagtta |
200 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25539189 |
atataaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataa----gataagtta |
25539094 |
T |
|
| Q |
201 |
gaacatacactaaaatcaaaatcacatccatgtattgagaatat |
244 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25539093 |
gaacataaactaaaatcaaaatcacatccatgtattgagaatat |
25539050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 25483802 - 25483566
Alignment:
| Q |
4 |
aaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
25483802 |
aaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacgtt |
25483703 |
T |
|
| Q |
104 |
tnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagatagataagttagaa |
203 |
Q |
| |
|
| |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25483702 |
taaaaaatcatgattgatattgttggagatgtattggactatcttctcaataaacttgtgttcatatctattcatgtccaata----agataagttagaa |
25483607 |
T |
|
| Q |
204 |
catacactaaaatcaaaatcacatccatgtattgagaatat |
244 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
25483606 |
catacactaaaaccaaaatcatatccatgcattgagaatat |
25483566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 26056661 - 26056429
Alignment:
| Q |
8 |
tcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnn |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
26056661 |
tcctaccatgcggacctcattctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgcaatccaacagggtatttggctacgtttaaa |
26056562 |
T |
|
| Q |
108 |
nnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagatagataagttagaacata |
207 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
26056561 |
aaaacatgattgatcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaata----aggtaagttagaacata |
26056466 |
T |
|
| Q |
208 |
cactaaaatcaaaatcacatccatgtattgagaatat |
244 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
26056465 |
cactagaatcaaaatcacatccatgtattgataatat |
26056429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 26076631 - 26076399
Alignment:
| Q |
8 |
tcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnn |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
26076631 |
tcctaccatgcggacctcattctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgcaatccaacagggtatttggctacgtttaaa |
26076532 |
T |
|
| Q |
108 |
nnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagatagataagttagaacata |
207 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
26076531 |
aaaacatgattgatcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaata----aggtaagttagaacata |
26076436 |
T |
|
| Q |
208 |
cactaaaatcaaaatcacatccatgtattgagaatat |
244 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
26076435 |
cactagaatcaaaatcacatccatgtattgataatat |
26076399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 45 - 244
Target Start/End: Complemental strand, 25511640 - 25511445
Alignment:
| Q |
45 |
agaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcgacta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
25511640 |
agaagcaatttcacttgttctattcgggactgcaatccaacagggtatttggctacgttcaaaaaaacatgattgatcttgttggagatgtcttcgacta |
25511541 |
T |
|
| Q |
145 |
tcttctcaataaacttgtattcatatctattcatgtccaataagatagataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatat |
244 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
25511540 |
tcttctcaataaacttgtattcagatctattcatgtccaata----aggtaagttagaacatacactagaatcaaaatcacatccatgtattgataatat |
25511445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26647225 - 26647035
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||||||| ||||| | || ||||| | | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
26647225 |
cataaagtcctaccatatggaccccttcatcagattctttatcaagaagcaatttcacttgttctaatcgggactctaatccaacagggtatttggctac |
26647126 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | || ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
26647125 |
atgtaaaatgacacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagata |
26647035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 26753193 - 26753003
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||||||| ||||| | || ||||| | | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
26753193 |
cataaagtcctaccatatggaccccttcatcagattctttatcaagaagcaatttcacttgttctaatcgggactctaatccaacagggtatttggctac |
26753094 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | || ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
26753093 |
atgtaaaatgacacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagata |
26753003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 26656711 - 26656532
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||| ||| | |||||||||||||||||||||| || ||| |||| ||||||||||||||||||||| || |
|
|
| T |
26656711 |
cataaagtcctaccatgagaacctcatccttagatcccttatcaagaagcaatttcacttgttgtactcgagactctaatccaacagggtatttggcaac |
26656612 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgt |
180 |
Q |
| |
|
|| | || ||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26656611 |
atgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatctattcatgt |
26656532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 26762682 - 26762503
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||| ||| | |||||||||||||||||||||| || ||| |||| ||||||||||||||||||||| || |
|
|
| T |
26762682 |
cataaagtcctaccatgagaacctcatccttagatcccttatcaagaagcaatttcacttgttgtactcgagactctaatccaacagggtatttggcaac |
26762583 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgt |
180 |
Q |
| |
|
|| | || ||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26762582 |
atgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatctattcatgt |
26762503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 27215194 - 27214963
Alignment:
| Q |
5 |
aagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacattt |
104 |
Q |
| |
|
||||||||||||| ||||||| |||| ||| ||| |||||||||||||||| ||||||| |||| ||| |||||||||||||||| |||||| |||| | |
|
|
| T |
27215194 |
aagtcctaccatgtggacctcttccttagatcccttgtcaagaagcaattttacttgttgtatttgggtatgtaatccaacagggtgtttggcaacatgt |
27215095 |
T |
|
| Q |
105 |
nnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagatagataagttagaac |
204 |
Q |
| |
|
|| |||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| | |
|
|
| T |
27215094 |
aaaaaatcacgattcgtcttgtttgagatgtcttcaactatcttctcaataaacttgtattcatatctgttaatgtccaataa----gataagttagtgc |
27214999 |
T |
|
| Q |
205 |
atacactaaaatcaaaatcacatccatgtattgaga |
240 |
Q |
| |
|
|||||| || ||||| |||| ||||||||| ||||| |
|
|
| T |
27214998 |
atacaccaacatcaatatcagatccatgtactgaga |
27214963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 26884775 - 26884626
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
|||||||||||||| | ||||| || |||| |||||||||||||||||||||||||||||| | || ||||||| |||| |||||| ||||||| |
|
|
| T |
26884775 |
tcaagaagcaattttaattgttgtactcggtactgtaatccaacagggtatttggctacatgtaaaacaacacgattgattttgtcggagatatcttcga |
26884676 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|||||||| | ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
26884675 |
ctatcttcccgataaactcgtattcgtatctattcatgtccaataagata |
26884626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27530737 - 27530927
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| |||||| || |||||| |||| || ||||||||||||||||||||| |||||||| || |
|
|
| T |
27530737 |
cataaagtcctaccatgtggacctcatcatcagatttttcatcaagatgccctttcacatgttgtactcgggactgtaatccaacaggatatttggcaac |
27530836 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | || || | || ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27530837 |
atctaagggctcacgactaatcctgttggaaatgtcttcgactatctttccaataaactcgtattcatatctattcatgtccaataagata |
27530927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26862326 - 26862227
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| | ||| | || ||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
26862326 |
cataaagtcctaccatgtgtaccccttcatcagattccatatcaagaagcaatttcacttgttctactcgggactttaatccaacagggtatttggctac |
26862227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28786984 - 28786794
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| || ||||||||| |||||||||||| || ||| ||||| |||||||||||||| ||||| || |
|
|
| T |
28786984 |
cataaagtcctaccatgcggactccatcatcagatccttcatcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaattggcaac |
28786885 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| ||||||||||||| || |||||| | ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28786884 |
atgtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatctattcatgtcatataagata |
28786794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28793105 - 28792915
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| || ||||||||| |||||||||||| || ||| ||||| |||||||||||||| ||||| || |
|
|
| T |
28793105 |
cataaagtcctaccatgcggactccatcatcagatccttcatcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaattggcaac |
28793006 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| ||||||||||||| || |||||| | ||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
28793005 |
atgtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatctattaatgtccgataagata |
28792915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27337531 - 27337716
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||| | || ||||| || |||||||||||||| ||||||| || |||||||||||||||||||||||||||||| || |
|
|
| T |
27337531 |
cataaagtcctaccatgttgaccccttcatcagattcctcatcaagaagcaattttacttgttgtactcgggactgtaatccaacagggtatttggcaac |
27337630 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaata |
186 |
Q |
| |
|
| | || ||||||| | | ||| |||| ||||||||| |||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
27337631 |
gtgtagaaaaacacgattgatcctatcggaaatgtgttcgactatattctcaataagctcgtactcatatctattcatgtccaata |
27337716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27398271 - 27398456
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||| | || ||||| || |||||||||||||| ||||||| || |||||||||||||||||||||||||||||| || |
|
|
| T |
27398271 |
cataaagtcctaccatgttgaccccttcatcagattcctcatcaagaagcaattttacttgttgtactcgggactgtaatccaacagggtatttggcaac |
27398370 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaata |
186 |
Q |
| |
|
| | || ||||||| | | ||| |||| ||||||||| |||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
27398371 |
gtgtagaaaaacacgattgatcctatcggaaatgtgttcgactatattctcaataagctcgtactcatatctattcatgtccaata |
27398456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 28781805 - 28781657
Alignment:
| Q |
43 |
caagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcgac |
142 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||||||||||||||| ||||| |||| | | || |||| ||||||||||||| || ||| |
|
|
| T |
28781805 |
caagaagcgatttcacttgttgtactcgggactgtaatccaacagggtaattggcaacatgtaagtgctgacgactgatcttgttggagatgtatttgac |
28781706 |
T |
|
| Q |
143 |
tatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28781705 |
tatatcgccaataaacttgtattcatatctattcatgtcatataagata |
28781657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 25492755 - 25492914
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| || || |||||||||||||| |||| || |||||| ||||||||||||||||||||||| || |
|
|
| T |
25492755 |
cataaagtcctaccatgtggaactcatcctcagatacctcatctagaagcaatttcacgtgttgtactcgggattgtaatccaacagggtatttggcaac |
25492854 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaactt |
160 |
Q |
| |
|
|| | || ||||||| | | ||||||||||||||||| |||||||||||||| |
|
|
| T |
25492855 |
atgtaatgaaacacgattgatcctatccgagatgtcttcgactatattctcaataaactt |
25492914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 27592498 - 27592647
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| |||||||||||| || ||| ||||| |||||||||||||| |||| |||||| || |||| ||||||||||||| || || |
|
|
| T |
27592498 |
tcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaagtggcaacatttaagggctgtcgactgatcttgttggagatgtatttga |
27592597 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27592598 |
ctatctttccaataagcttgtattcatatctattcatgtgcaataagata |
27592647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27717935 - 27718125
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||| | ||||||||| |||||||||||| || ||| ||||| |||||||||||||| ||||| || |
|
|
| T |
27717935 |
cataaagtcctaccatgtggactccatcatcagatctttcatcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaattggcaac |
27718034 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || || | ||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
27718035 |
atgtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagata |
27718125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 26623976 - 26623835
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
|||||||| |||||||||||| || | | ||||||||||||||||||||||| || |||| | || ||||||| ||||||||||||| || || |
|
|
| T |
26623976 |
tcaagaagtgatttcacttgttgtagttgagactgtaatccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttga |
26623877 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtcca |
183 |
Q |
| |
|
||||||| |||||||| | ||||||||||| |||||||||| |
|
|
| T |
26623876 |
ctatcttttcaataaaatcatattcatatctgttcatgtcca |
26623835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 26729953 - 26729812
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
|||||||| |||||||||||| || | | ||||||||||||||||||||||| || |||| | || ||||||| ||||||||||||| || || |
|
|
| T |
26729953 |
tcaagaagtgatttcacttgttgtagttgagactgtaatccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttga |
26729854 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtcca |
183 |
Q |
| |
|
||||||| |||||||| | ||||||||||| |||||||||| |
|
|
| T |
26729853 |
ctatcttttcaataaaatcatattcatatctgttcatgtcca |
26729812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 27677097 - 27677246
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| |||||| ||||| || ||| ||||| |||||||||||||| |||| |||| | ||| |||| ||||||||||||| || || |
|
|
| T |
27677097 |
tcaagaagcgatttcatttgttgtactcgagactgcaatccaacagggtaagtggcaacatgtaagggttgttgactgatcttgttggagatgtatttga |
27677196 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27677197 |
ctatctttccaataagcttgtattcatatctattcatgtgcaataagata |
27677246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 27679655 - 27679506
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| |||||||||||| || ||| ||||| |||||||||||||| |||| |||| | || |||| ||||||||||||| || || |
|
|
| T |
27679655 |
tcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaagtggcaacatgtaagggctgtcgactgatcttgttggagatgtatttga |
27679556 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27679555 |
ctatctttccaataagcttgtattcatatctattcatgtgcaataagata |
27679506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 27705957 - 27706030
Alignment:
| Q |
118 |
tgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| |||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27705957 |
tgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagata |
27706030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 26803078 - 26803002
Alignment:
| Q |
115 |
gattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26803078 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagata |
26803002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 27427089 - 27427234
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| |||||||||||| || ||| ||||| |||||||||||||| |||| |||| | || |||| ||||||||||||| || || |
|
|
| T |
27427089 |
tcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaagtggcaacatgtaaggactgtcgactgatcttgttggagatgtatttga |
27427188 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataa |
187 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
27427189 |
ctatctttccaataagctcgtattcatatctattcatgtccaataa |
27427234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 27604257 - 27604330
Alignment:
| Q |
118 |
tgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|||| ||||||||||| |||| |||||||| |||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
27604257 |
tgatcttgttggagatttctttcactatctttccaataagctcgtattcatatctattcatgtccaataagata |
27604330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 27610556 - 27610746
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||| | ||||||||| ||||||||| || || | | ||||| |||||||||||||| ||||| || |
|
|
| T |
27610556 |
cataaagtcctaccatgtggactccatcatcagatctttcatcaagaagcgatttcacttcttgtacttgagactgcaatccaacagggtaattggcaac |
27610655 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| ||||||||||||| || |||||||| || |||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
27610656 |
atgtaagggttgacgactgatcttgttggagatgtatttgactatctctccagtaaactcgtattcatatctattcatgcccaataagata |
27610746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 26824563 - 26824464
Alignment:
| Q |
3 |
taaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacat |
102 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||| | | |||||||| |||||||||||| || |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
26824563 |
taaagtcctaccatatggaccacatcatcagattcgttatcaagaagagatttcacttgttgtactcgggactgtaatccaaccgggtatttggcaacat |
26824464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 31285264 - 31285126
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| |||||||||||||| ||||| |||| | || ||||||| ||||||||||||| || || |
|
|
| T |
31285264 |
tcaagaagcaatttcacttgttgtattcgaaacttaaatccaacagggtaattggcaacatgtaagggcacacgattgatcttgttggagatgtatttga |
31285165 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgt |
180 |
Q |
| |
|
|||| | ||||||| | ||||||||||| ||||||| |
|
|
| T |
31285164 |
ctatgtctccaataaaatcatattcatatctgttcatgt |
31285126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 27698093 - 27698194
Alignment:
| Q |
72 |
gactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatc |
171 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| | | || |||| ||||||||||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
27698093 |
gactgtaatccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcatatc |
27698192 |
T |
|
| Q |
172 |
ta |
173 |
Q |
| |
|
|| |
|
|
| T |
27698193 |
ta |
27698194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 26862200 - 26862142
Alignment:
| Q |
130 |
agatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataag |
188 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
26862200 |
agatgtctctgactatcttcccaataaactcatattcatatctattcacgtccaataag |
26862142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 31284876 - 31284827
Alignment:
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
31284876 |
ctatcttcccagtaagcttgtattcatatctattcatgcccaacaagata |
31284827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 28127111 - 28127301
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | ||| | || |||||||| |||||||||| || | || ||||||||||||||| |||||||| || |
|
|
| T |
28127111 |
cataaagtcctaccatgtggacctcatcatcatatcccttatcgagaagcaaattcacttgttgtacttggtcctgtaatccaacaggatatttggcaac |
28127210 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | || ||||||| ||| ||| ||||||| || |||||||| |||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
28127211 |
atgtaagaaaacacgattgatcctgtcggatatgtctttgattatcttctgaataaacttgtattcatatctattaatctccaataagata |
28127301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 267776 - 267962
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||| ||| ||||| ||||| |||| ||||| || | |||||||||||||||||||||| || | | ||| ||||||||||||||| ||||| || |
|
|
| T |
267776 |
cataaattccaaccatatggaccccatcatcagatccattatcaagaagcaatttcacttgttgtacttgagaccataatccaacagggtaattggcaac |
267875 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataa |
187 |
Q |
| |
|
|| | || || |||| ||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
267876 |
atgtaagggctcacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcatatctattcatgtcaaataa |
267962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 28163811 - 28163980
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| | ||| | || ||||||||||||||||||| || | | || |||||||||||||| ||||| || || |
|
|
| T |
28163811 |
cataaagtcctaccatgtggacctcatcatcatatcccttatcgagaagcaatttcacttgttgtacttgagattgtaatccaacaggatattttgcaac |
28163910 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatat |
170 |
Q |
| |
|
|| | || ||||||| ||| |||| || ||| || ||||| || ||||||||||||||||||| |
|
|
| T |
28163911 |
atgtaaaaaaacacgattgatcctgtcggaggtgcctttgattatctcctgaataaacttgtattcatat |
28163980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 18698832 - 18699022
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||| || | ||||||||| ||||||||||| || ||| ||||| |||||||||||||| ||||| || |
|
|
| T |
18698832 |
cataaagtcctaacatgcggactccatcatcagatcctttatcaagaagcgctttcacttgttgtactcgagactgcaatccaacagggtaattggcaac |
18698931 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| |||||||||| || || |||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18698932 |
atgtaagggctgacgactgatcttgttggagacgtatttgactatatctccaataaacttgtattcatatctattcatgtccaataagata |
18699022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 18730936 - 18731126
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||| ||||||||| || | | ||| || | ||||||||| |||||||||||| || ||| ||||| || ||||||||||| |||| || |
|
|
| T |
18730936 |
cataaagtcctatcatgcggactccaccataagatcctttatcaagaagcgatttcacttgttgtactcgagactgcaacccaacagggtaaatggcaac |
18731035 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| |||||||||| | || ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18731036 |
atgtaagggctgacgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcatatctattcatgtccaataagata |
18731126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 18654909 - 18655099
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||| ||||||||| || | ||||| || | ||||||||| |||||||||||| || ||| ||||| || ||||||||||| |||| | |
|
|
| T |
18654909 |
cataaagtcctatcatgcggactccaccatcagatcctttatcaagaagcgatttcacttgttgtactcgagactgcaacccaacagggtaactggcagc |
18655008 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| |||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18655009 |
atgtaagggctgacgactgatcttgttggagacatatttgactatctttccaataaacttgtattcatatctattcatgtccaataagata |
18655099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 18678992 - 18679182
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||| | ||||||||| |||||||||||| || ||| ||||| |||||||||||||| ||||| || |
|
|
| T |
18678992 |
cataaagtcctaccatgcggactccatcataagatcattcatcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaattggcaac |
18679091 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | || |||| ||||| |||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18679092 |
atgtaagggctgccgactgatcttgttagagacgtatttgactatctctccaataaacttgtattcatatctattcatgtccaataagata |
18679182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 18074466 - 18074321
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| |||||||||||| || ||| ||||| |||||||||||||| |||| |||| | || |||| ||||||||||||| || || |
|
|
| T |
18074466 |
tcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaagtggcaacatgtaaggactgtcgactgatcttgttggagatgtatttga |
18074367 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataa |
187 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
18074366 |
ctatctttccaataagctcgtattcatatctattcatgtccaataa |
18074321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 18723656 - 18723707
Alignment:
| Q |
140 |
gactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18723656 |
gactatctttccaataaacttgtattcatatctattcatgtccaataagata |
18723707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8233 - 8043
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||| || ||||||||| ||||||| |||| || ||| |||||||||||||||||||| ||||| || |
|
|
| T |
8233 |
cataaagtcctaccatgtggactccatcatcagatccttcatcaagaagcgatttcacatgttgtactcgagactgtaatccaacagggtaattggcaac |
8134 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| ||||||||||||| || |||||| | ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8133 |
atgtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagata |
8043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 13111 - 13301
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||| || ||||||||| ||||||| |||| || ||| |||||||||||||||||||| ||||| || |
|
|
| T |
13111 |
cataaagtcctaccatgtggactccatcatcagatccttcatcaagaagcgatttcacatgttgtactcgagactgtaatccaacagggtaattggcaac |
13210 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || |||| ||||||||||||| || |||||| | ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13211 |
atgtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagata |
13301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 4189 - 4338
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| ||||||| |||| || ||| |||||||||||||||||||| ||||| |||| | |||| |||| ||||||||||||| | || |
|
|
| T |
4189 |
tcaagaagcgatttcacatgttgtactcgagactgtaatccaacagggtaattggcaacatgtaagggctgatgactgatcttgttggagatgttcttga |
4288 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4289 |
ctatctctccaataaacttgtattcatatctattaatgtccgataagata |
4338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 60274 - 60129
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| |||||||||||| || ||| ||||| |||||||||||||| |||| |||| | || |||| ||||||||||||| || || |
|
|
| T |
60274 |
tcaagaagcgatttcacttgttgtactcgagactgcaatccaacagggtaagtggcaacatgtaaggactgtcgactgatcttgttggagatgtatttga |
60175 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataa |
187 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
60174 |
ctatctttccaataagctcgtattcatatctattcatgtccaataa |
60129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 29273315 - 29273460
Alignment:
| Q |
42 |
tcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctacatttnnnnnnncatgattgatattgttggagatgtcttcga |
141 |
Q |
| |
|
||||||||| |||| ||||||| || | | |||||||||||||||||||||||||| |||| | | | |||| ||||||||||||| || || |
|
|
| T |
29273315 |
tcaagaagcgatttgacttgttgtacttgagactgtaatccaacagggtatttggcaacatgtaagggcacgcggctgatcttgttggagatgtatttga |
29273414 |
T |
|
| Q |
142 |
ctatcttctcaataaacttgtattcatatctattcatgtccaataa |
187 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29273415 |
ctatctctccgataaacttgtattcatatctattcatgtcaaataa |
29273460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 2975 - 3165
Alignment:
| Q |
1 |
cataaagtcctaccatgcggacctcatcctcagagcccatgtcaagaagcaatttcacttgttctattcgggactgtaatccaacagggtatttggctac |
100 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||| | ||||||||| |||||||||||| || ||| |||| | |||||||||||| ||||| || |
|
|
| T |
2975 |
cataaagtcctaccatgtggactccatcatcagatctttcatcaagaagcgatttcacttgttgtactcgagacttcattccaacagggtaattggcaac |
3074 |
T |
|
| Q |
101 |
atttnnnnnnncatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagata |
191 |
Q |
| |
|
|| | | || || | ||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
3075 |
atgtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagata |
3165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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