View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_62 (Length: 260)
Name: NF16741_low_62
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 32182632 - 32182395
Alignment:
| Q |
7 |
tccaacaaaatcaggtgtccatgttgcatgaccctattacaaagttattacaataacactataagttatgtttagattgacttatttgaacttgcatagt |
106 |
Q |
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| T |
32182632 |
tccaacagaatcaggtgtccatgttgcatgaccctattacaaaattattacaataacactataagttatgtttagattgacttatttgaacttgcatagt |
32182533 |
T |
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| Q |
107 |
gacataacacatatgcaaacgtgaagctatttggaagagcttataaaaacaatttatgacatgtatattatgnnnnnnnagcttatttccataaactctt |
206 |
Q |
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| T |
32182532 |
gacataacacatatgcaaacgtgaagctatttgaaagagcttataaaaacaatttatgacatgt-ccgtatgtttttttagcttatttccataaactctt |
32182434 |
T |
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| Q |
207 |
cataagagcttctgaaaacagtctatgacattccatatg |
245 |
Q |
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| T |
32182433 |
cataagagcttctgaaaacagtctatgacattccatatg |
32182395 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 45927396 - 45927359
Alignment:
| Q |
186 |
agcttatttccataaactcttcataagagcttctgaaa |
223 |
Q |
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| T |
45927396 |
agcttatttccataaactctccataatagcttctgaaa |
45927359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 7871690 - 7871649
Alignment:
| Q |
186 |
agcttatttccataaactcttcataagagcttctgaaaacag |
227 |
Q |
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| T |
7871690 |
agcttatttccataagctcttcaaaagagcttatgaaaacag |
7871649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 10391439 - 10391399
Alignment:
| Q |
136 |
tttggaagagcttataaaaacaatttatgacatgtatatta |
176 |
Q |
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|||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
10391439 |
tttggaagagtttataaaaacactttatgacatgtctatta |
10391399 |
T |
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