View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_63 (Length: 253)
Name: NF16741_low_63
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_63 |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: scaffold0098 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 49084 - 49286
Alignment:
| Q |
15 |
gagatgaagaagagagggtatgcacactttttgggtttgatattgtattttgcgtttgtataagtataagataactcgacctaatttttaataaattagt |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49084 |
gagatgaagaagagagggtgtgcacactttttgggtttgatattgtattttgcgtttgtataaatataagataactcgacctaatttttaataaattagt |
49183 |
T |
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| Q |
115 |
gaccaagaagaaaaatgacgtaatttttaaaacaaattcaatcactatatgtgattatacctgataaaaatattatttttgtcatttgtacaaatgttat |
214 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49184 |
gaccaagaagaaaaatgatgtaatttttaaaacaaattcaatcactatatgtgattatacatgataaaaatattatttttgtcatttgtacaaatgttat |
49283 |
T |
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| Q |
215 |
ata |
217 |
Q |
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||| |
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| T |
49284 |
ata |
49286 |
T |
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Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 40973935 - 40974131
Alignment:
| Q |
15 |
gagatgaagaagagagggtatgcacactttttgggtttgatattgtattttgcgtttgtataagtataagataactcgacctaatttttaataaattagt |
114 |
Q |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40973935 |
gagatgaagaagagagggtgtgaacactttttgggtttgatattgtattttgcgtttgtataaatataagataactcgacctaatttttaataaattagt |
40974034 |
T |
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| Q |
115 |
gaccaagaagaaaaatgacgtaatttttaaaacaaattcaatcactatatgtgattatacctgataaaaatattatttttgtcatttgtacaaatgtta |
213 |
Q |
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| T |
40974035 |
gaccaagaagaaaaatgacgtaattttttaaataaattcaatcactatatgtgat--tacctgataaaaatattatttttgtcatttgtacaaatgtta |
40974131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 27461308 - 27461447
Alignment:
| Q |
15 |
gagatgaagaagagagggtatgcacactt-tttgggtttgatattgtattttgcgtttgtataagtataagataactcgacctaatttttaataaattag |
113 |
Q |
| |
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||||||||||| ||||| ||||||||| |||| ||| |||||||||||| | |||||| || | ||||||| | ||| ||||||||||||||||| |
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| T |
27461308 |
gagatgaagaactaagggtgtgcacacttctttgagttagatattgtatttggggtttgtcgaaattcaagataaattgacgcaatttttaataaattag |
27461407 |
T |
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| Q |
114 |
tgaccaagaagaaaaatgacgtaatttttaaaacaaattc |
153 |
Q |
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||||||||| |||| ||| ||||||||||||||| |||| |
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| T |
27461408 |
agaccaagaaaaaaattgatgtaatttttaaaacacattc |
27461447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 42129763 - 42129807
Alignment:
| Q |
115 |
gaccaagaagaaaaatgacgtaatttttaaaacaaattcaatcac |
159 |
Q |
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||||||||| |||| ||||||||||||||||||| |||| ||||| |
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| T |
42129763 |
gaccaagaaaaaaattgacgtaatttttaaaacacattcgatcac |
42129807 |
T |
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