View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_72 (Length: 228)
Name: NF16741_low_72
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 9066997 - 9066816
Alignment:
| Q |
11 |
caaagggcaaaaaacaagaaacataaatagctatctgttcacagggaataaataaaccaaacacaaacatgatcaaagaatgcattaaacattataagca |
110 |
Q |
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| T |
9066997 |
caaagagcaaaaaacaagaaacataaatagctgtctgttcaaagggaataaataaaccaaatacaaacatgatcaaagaatgcattaaacattataagca |
9066898 |
T |
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| Q |
111 |
aaagcatagtccttcaattagcaaaccaaaaagcatatttactacactcaacaaacaagttcctctgcactattgttatttt |
192 |
Q |
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| T |
9066897 |
aaagcatagtccttcaattagcaaaccaaaaagcatatttactacactcaacaaacaagttcctttgcactattgttatttt |
9066816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 14508388 - 14508494
Alignment:
| Q |
106 |
aagcaaaagcatagtccttcaattagcaaaccaaaaagcatatttactacactcaacaaacaagttcctctgcactattgttattttcatagatcttaca |
205 |
Q |
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| T |
14508388 |
aagcaaaagcatagtcctttaattagaaaaatagaaagcatgtaaactactctcaacaaacaagttcctatgcaccattgttgttttcaaagatcttaaa |
14508487 |
T |
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| Q |
206 |
gagagag |
212 |
Q |
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|||||| |
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| T |
14508488 |
aagagag |
14508494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 28326920 - 28326884
Alignment:
| Q |
106 |
aagcaaaagcatagtccttcaattagcaaaccaaaaa |
142 |
Q |
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| T |
28326920 |
aagcaaaagcatagtcctttaattagcaaactaaaaa |
28326884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 1718442 - 1718384
Alignment:
| Q |
151 |
actacactcaacaaacaagttcctctgcactattgttattttcatagatcttacagaga |
209 |
Q |
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||||||| | ||||||||||||| |||||| ||| |||||||| ||||| ||||||||| |
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| T |
1718442 |
actacacaccacaaacaagttccactgcaccattcttattttcttagatgttacagaga |
1718384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 1718615 - 1718522
Alignment:
| Q |
11 |
caaagggcaaaaaacaagaaacataaatagctatctgttcacagggaataaataaaccaaacacaaacatgatcaaagaatgcattaaacattat |
105 |
Q |
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||||| |||||||| |||||||||| ||| | |||||||| |||| |||||| | ||||| |||| |||||| ||||| | ||||||||||||| |
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| T |
1718615 |
caaagagcaaaaaataagaaacatagatacc-atctgttcgaagggtataaattagccaaatacaagcatgattaaagagtacattaaacattat |
1718522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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