View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16741_low_77 (Length: 214)

Name: NF16741_low_77
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16741_low_77
NF16741_low_77
[»] chr7 (10 HSPs)
chr7 (1-198)||(36217494-36217691)
chr7 (1-198)||(36221479-36221682)
chr7 (1-90)||(36225999-36226088)
chr7 (1-120)||(35939415-35939534)
chr7 (2-65)||(35958128-35958191)
chr7 (6-84)||(35977564-35977642)
chr7 (6-84)||(35998976-35999054)
chr7 (1-65)||(35946923-35946987)
chr7 (2-90)||(35982126-35982214)
chr7 (2-90)||(36003538-36003626)
[»] chr1 (2 HSPs)
chr1 (1-63)||(18118194-18118256)
chr1 (22-87)||(18125814-18125879)
[»] chr4 (2 HSPs)
chr4 (2-87)||(49340585-49340670)
chr4 (23-87)||(49351970-49352034)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 36217494 - 36217691
Alignment:
Q  1 cacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttgatataagacagatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217494 cacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttgatataagacagatc 36217593  T
Q  101 gttatcaaaattatcaactccgtttttgcttcagctgcaccaagtgttcctattgctccccaagaagatagtaaccactgtgacattgagcaactaca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36217594 gttatcaaaattatcaactccgtttttgcttcagctgcaccaagtgttcctattgctccccaagaagatagtaaccactgtgacattgagcaactaca 36217691  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 36221479 - 36221682
Alignment:
Q  1 cacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttgatataagacagatc 100  Q
    |||||||||||  ||||||| |||||||||||||||||||||  |||| ||||||||||| ||||  ||||||||   |||||||||||| || |  ||     
T  36221479 cacacttgcaaggttggtgttcaatgataagaggatagatgatattttccaattgaagatttgggtgtgtgtctccaatgattttgatattaggcgcatt 36221578  T
Q  101 gttatcaaaattatcaactccgtttttgcttcag------ctgcaccaagtgttcctattgctccccaagaagatagtaaccactgtgacattgagcaac 194  Q
     ||||||||||||||||||| | |||||||||||      || ||||||||||| |||| |||  ||||||||| | |||||| | ||| ||||||||||    
T  36221579 attatcaaaattatcaactctgcttttgcttcagcatcaactccaccaagtgttgctatggctaaccaagaagacattaaccattttgatattgagcaac 36221678  T
Q  195 taca 198  Q
    ||||    
T  36221679 taca 36221682  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 36226088 - 36225999
Alignment:
Q  1 cacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttgatat 90  Q
    |||||||||||||||||||| ||| ||||||||| | |||||  |||| ||||||||||||||||  ||| |||||| ||||||||||||    
T  36226088 cacacttgcaaaattggtgttcaacgataagagggttgatgatcttttccaattgaagatgtgggtgtgtatctctgatgattttgatat 36225999  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 35939534 - 35939415
Alignment:
Q  1 cacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttgatataagacagatc 100  Q
    |||||||||||| ||||||| ||||||||||||| |  || || |||| |||||||||||||||   ||||||||   ||| |||||||| || |||||     
T  35939534 cacacttgcaaagttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggttgtgtgtctccaatgagtttgatatcaggcagata 35939435  T
Q  101 gttatcaaaattatcaactc 120  Q
     |||| ||||| ||||||||    
T  35939434 attattaaaataatcaactc 35939415  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 35958191 - 35958128
Alignment:
Q  2 acacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtggg 65  Q
    ||||||||||| | ||||| ||||||||||||||| ||| || |||| || |||||||||||||    
T  35958191 acacttgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaagatgtggg 35958128  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 35977642 - 35977564
Alignment:
Q  6 ttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattt 84  Q
    ||||||| | ||||| ||||||||||||||| ||| || |||| || |||||||||||||  ||| |||||| ||||||    
T  35977642 ttgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaagatgtgggtgtgtatctctgatgattt 35977564  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 35999054 - 35998976
Alignment:
Q  6 ttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattt 84  Q
    ||||||| | ||||| ||||||||||||||| ||| || |||| || |||||||||||||  ||| |||||| ||||||    
T  35999054 ttgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaagatgtgggtgtgtatctctgatgattt 35998976  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35946987 - 35946923
Alignment:
Q  1 cacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtggg 65  Q
    ||||||||| || | ||||| |||||||||||||||| || || |||| || |||||||||||||    
T  35946987 cacacttgcgaagtcggtgttcaatgataagaggatacatcaacttttccagttgaagatgtggg 35946923  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 35982214 - 35982126
Alignment:
Q  2 acacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttgatat 90  Q
    ||||||||||||||||| | ||||||| ||||||| ||  ||  |||| | |||| ||||||||  || ||||||| ||||||||||||    
T  35982214 acacttgcaaaattggttttcaatgatgagaggatggaccaatcttttaagttgaggatgtgggtgtgcgtctctgatgattttgatat 35982126  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 36003626 - 36003538
Alignment:
Q  2 acacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttgatat 90  Q
    ||||||||||||||||| | ||||||| ||||||| ||  ||  |||| | |||| ||||||||  || ||||||| ||||||||||||    
T  36003626 acacttgcaaaattggttttcaatgatgagaggatggaccaatcttttaagttgaggatgtgggtgtgcgtctctgatgattttgatat 36003538  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18118256 - 18118194
Alignment:
Q  1 cacacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtg 63  Q
    |||||||||||| ||||| | ||| ||||||||||| |||||| |||||||||||||||||||    
T  18118256 cacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtg 18118194  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 18125879 - 18125814
Alignment:
Q  22 caatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttga 87  Q
    |||||||||||| ||||||||| | |||||||||||||||||||  |||||||||| | |||||||    
T  18125879 caatgataagagaatagatgaactctttcaattgaagatgtgggtgtgtgtctctgataattttga 18125814  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 49340585 - 49340670
Alignment:
Q  2 acacttgcaaaattggtgtacaatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttga 87  Q
    |||||||||||  | ||||  |||||||||||  |||||||   ||||| ||||||||||||||  |||||||||| |||||||||    
T  49340585 acacttgcaaaggtcgtgtttaatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctgatgattttga 49340670  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 49351970 - 49352034
Alignment:
Q  23 aatgataagaggatagatgaagtttttcaattgaagatgtgggcatgtgtctctgttgattttga 87  Q
    |||||||||||  |||||||   ||||| ||||||||||||||  |||||||||| |||||||||    
T  49351970 aatgataagagtttagatgagacttttccattgaagatgtgggtgtgtgtctctgatgattttga 49352034  T

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