View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16741_low_8 (Length: 589)

Name: NF16741_low_8
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16741_low_8
NF16741_low_8
[»] chr2 (3 HSPs)
chr2 (18-407)||(9370568-9370957)
chr2 (399-572)||(9371891-9372065)
chr2 (500-566)||(14922772-14922838)
[»] chr1 (2 HSPs)
chr1 (17-130)||(40562430-40562543)
chr1 (18-126)||(1207450-1207558)
[»] chr8 (5 HSPs)
chr8 (499-560)||(44327553-44327614)
chr8 (17-124)||(9753962-9754069)
chr8 (20-126)||(11147845-11147951)
chr8 (502-567)||(7409375-7409440)
chr8 (18-126)||(12738364-12738472)
[»] chr5 (1 HSPs)
chr5 (500-559)||(41733005-41733064)
[»] chr4 (5 HSPs)
chr4 (499-564)||(55583706-55583771)
chr4 (44-126)||(21240545-21240628)
chr4 (44-125)||(32217936-32218018)
chr4 (500-560)||(45073184-45073244)
chr4 (77-124)||(47503807-47503855)
[»] chr3 (1 HSPs)
chr3 (18-122)||(48737720-48737824)
[»] chr7 (1 HSPs)
chr7 (20-127)||(22338164-22338271)
[»] chr6 (2 HSPs)
chr6 (18-124)||(30736613-30736719)
chr6 (500-557)||(33929971-33930028)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 9370568 - 9370957
Alignment:
Q  18 acaagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacgg 116  Q
    |||||| |||||||||||| ||||  ||| ||||| ||||||||||||||       ||||||||||||||| | |||||||||||||||| ||| ||||    
T  9370568 acaaggacaattcagtaaa-aaaatcattttctttttttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtcgaatattaaagaacgg 9370666  T
Q  117 agggagtatttcatccctaagaatcgactgtacggtcctagtgtttattaacccccacacagtgcacacatgcaatttatttccttgttattatcatcaa 216  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9370667 tgggagtatttcatccctaagaatcgactgtacagtcctagtgtttattaacccccacacagtgtacacatgcaatttatttccttgttattatcatcaa 9370766  T
Q  217 gtagtagcatcaacaaaaggagaatatctttataaccgttttaagccatttgactttggagttgacagatttggctaactttaattgattttggaccttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370767 gtagtagcatcaacaaaaggagaatatctttataaccgttttaagccatttgactttggagttgacagatttggctaactttaattgattttggaccttg 9370866  T
Q  317 ttggtagatggttccacttattatacagtatggcaagcaactagatgtggatcacattcatagatagtgaaatgacgagtaatcaatttag 407  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  9370867 ttggtagatggttccacttattatagagtatggcaagcaactagatgtggatcacattcatagatagtgaaatgaccagcaatcaatttag 9370957  T

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Target: chr2; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 399 - 572
Target Start/End: Original strand, 9371891 - 9372065
Alignment:
Q  399 tcaatttagatgtaaactcatcctagcctctaag-atgtccatgcgtcaaaataaggagaagcggatcgagggagtcaaagcaataataggattcacatt 497  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  9371891 tcaatttagatgtaaactcatcctagcctctaaggatgtccatgcgtcaaaataaggagaatcggatcgagggagtcaaaacaataataggattcacatt 9371990  T
Q  498 gagaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccatcgattctt 572  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  9371991 gagaagaattttgttcacacaaagtgtttggctgaaaagcacaaataatttaccaatataaccccatcgactctt 9372065  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 566
Target Start/End: Complemental strand, 14922838 - 14922772
Alignment:
Q  500 gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccatcg 566  Q
    |||||||||||||| || | ||| |||||||||||| ||  ||||||||  ||||||||||||||||    
T  14922838 gaagaatgttgttcacatatagtatttggctgaaaaacaacaataattttccaatataaccccatcg 14922772  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 40562543 - 40562430
Alignment:
Q  17 aacaagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacg 115  Q
    |||||||||||||||||||| || |  ||||||||||||||||||||||||       ||||||||||||||| | ||||||||| | |||||| |||||    
T  40562543 aacaagggcaattcagtaaa-aatatcattctctttctttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattgagggacg 40562445  T
Q  116 gagggagtatttcat 130  Q
    |||||||||||||||    
T  40562444 gagggagtatttcat 40562430  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 1207558 - 1207450
Alignment:
Q  18 acaagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacgg 116  Q
    ||||||||||||||||||| || |  ||| |||||||||||||| |||||       ||||||||||||||| | ||||||||| | |||| | ||||||    
T  1207558 acaagggcaattcagtaaa-aatatcattatctttctttcatctctacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattaagggacgg 1207460  T
Q  117 agggagtatt 126  Q
    ||||||||||    
T  1207459 agggagtatt 1207450  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 560
Target Start/End: Complemental strand, 44327614 - 44327553
Alignment:
Q  499 agaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataacc 560  Q
    ||||||||||||||| |||| | ||||||| |||||| ||||| ||||||||||||||||||    
T  44327614 agaagaatgttgttcacacataatgtttggttgaaaaacacaagtaatttatcaatataacc 44327553  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 9753962 - 9754069
Alignment:
Q  17 aacaagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacg 115  Q
    ||||||| |||||||||||| || |  ||| ||||||||||||||||||||       ||||||||||||||| | ||||||||| | |||||| |||||    
T  9753962 aacaaggacaattcagtaaa-aatatcattatctttctttcatctttacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtattgagggacg 9754060  T
Q  116 gagggagta 124  Q
    |||||||||    
T  9754061 gagggagta 9754069  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 11147845 - 11147951
Alignment:
Q  20 aagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacggag 118  Q
    ||||||||||||||||| || |  |||||||| |||||||||||||||       ||||||||||||||||| |||||||||   |||| | ||||||||    
T  11147845 aagggcaattcagtaaa-aatatcattctcttcctttcatctttacacttttcttaatctgtgtgaaatgatcaagtaggtcacttattcagggacggag 11147943  T
Q  119 ggagtatt 126  Q
    ||||||||    
T  11147944 ggagtatt 11147951  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 567
Target Start/End: Original strand, 7409375 - 7409440
Alignment:
Q  502 agaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccatcga 567  Q
    |||||||||||| |||  |||||||||||||||| ||  |  |||||||||||||||| |||||||    
T  7409375 agaatgttgttcacacgtagtgtttggctgaaaaacatcaccaatttatcaatataactccatcga 7409440  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 12738472 - 12738364
Alignment:
Q  18 acaagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacgg 116  Q
    ||||||||||||||||||| || |  ||| ||||||||| ||||||||||       ||||||||||||||| | || |||||| | |||||| ||||||    
T  12738472 acaagggcaattcagtaaa-aatatcattatctttcttttatctttacacttttcttaatctgtgtgaaatggtcaaataggtcaagtattgagggacgg 12738374  T
Q  117 agggagtatt 126  Q
    || |||||||    
T  12738373 agagagtatt 12738364  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 500 - 559
Target Start/End: Complemental strand, 41733064 - 41733005
Alignment:
Q  500 gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataac 559  Q
    |||||||||| ||| |||| |||||||||||||||| ||  |||||||||||||||||||    
T  41733064 gaagaatgttattcacacatagtgtttggctgaaaaacatcaataatttatcaatataac 41733005  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 499 - 564
Target Start/End: Original strand, 55583706 - 55583771
Alignment:
Q  499 agaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataaccccat 564  Q
    ||||||||||||||| |||| | |||||||||||||| ||  | ||||||| ||||||||||||||    
T  55583706 agaagaatgttgttcacacataatgtttggctgaaaaacatcagtaatttaccaatataaccccat 55583771  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 21240545 - 21240628
Alignment:
Q  44 attctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacggagggagtatt 126  Q
    |||||||||||||||||| |||||       ||||||||||||||| | ||||||||| | ||| || ||||||||||||||||    
T  21240545 attctctttctttcatctctacacttttcttaatctgtgtgaaatggtcaagtaggtcaagtatcgagggacggagggagtatt 21240628  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 32218018 - 32217936
Alignment:
Q  44 attctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacggagggagtat 125  Q
    ||||||||||||||||||||||||       ||||||||||||||| | ||||||||  | |||||| |||||| ||||||||    
T  32218018 attctctttctttcatctttacactcttcttaatctgtgtgaaatggtcaagtaggtaaagtattgagggacggtgggagtat 32217936  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 45073184 - 45073244
Alignment:
Q  500 gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatataacc 560  Q
    |||||||||||||| ||||  ||||||||||| ||| ||| | ||||||| ||||||||||    
T  45073184 gaagaatgttgttcacacatggtgtttggctggaaaacaccagtaatttaccaatataacc 45073244  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 47503855 - 47503807
Alignment:
Q  77 tctgtgtgaaatgat-aagtaggtcgaatattgaaggacggagggagta 124  Q
    ||||||||||||| | ||||||||| | |||||||||||||||||||||    
T  47503855 tctgtgtgaaatggttaagtaggtcaagtattgaaggacggagggagta 47503807  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 48737720 - 48737824
Alignment:
Q  18 acaagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaatgat-aagtaggtcgaatattgaaggacgg 116  Q
    ||||||||||||||||||| || |  ||| |||||||||||||| |||||       ||||||||||||||  | ||||||||| | |||||||||||||    
T  48737720 acaagggcaattcagtaaa-aatatcattttctttctttcatctctacacttttcttaatctgtgtgaaattgtcaagtaggtcaagtattgaaggacgg 48737818  T
Q  117 agggag 122  Q
    ||||||    
T  48737819 agggag 48737824  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 22338164 - 22338271
Alignment:
Q  20 aagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaat-gataagtaggtcgaatattgaaggacggag 118  Q
    ||||||||||||||||| || |  | ||||||||||||||||||||||       |||||||||||||| | ||||||||||   |||| | ||||||||    
T  22338164 aagggcaattcagtaaa-aatatcactctctttctttcatctttacacttttcttaatctgtgtgaaatggttaagtaggtcacttatttagggacggag 22338262  T
Q  119 ggagtattt 127  Q
    |||||||||    
T  22338263 ggagtattt 22338271  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 30736613 - 30736719
Alignment:
Q  18 acaagggcaattcagtaaataaaaatattctctttctttcatctttacacnnnnnnnaatctgtgtgaaat-gataagtaggtcgaatattgaaggacgg 116  Q
    |||||| |||||||||||| || |  ||||||||||||||||||||||||       |||||||||||||| | ||| |||||| | ||||||  |||||    
T  30736613 acaaggacaattcagtaaa-aatatcattctctttctttcatctttacacttttcttaatctgtgtgaaatagttaaataggtcaagtattgagagacgg 30736711  T
Q  117 agggagta 124  Q
    ||||||||    
T  30736712 agggagta 30736719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 557
Target Start/End: Complemental strand, 33930028 - 33929971
Alignment:
Q  500 gaagaatgttgttcgcacaaagtgtttggctgaaaagcacaaataatttatcaatata 557  Q
    |||||||||||||| |||| | |||||||||| ||| ||| | |||||||||||||||    
T  33930028 gaagaatgttgttcacacataatgtttggctggaaaacaccagtaatttatcaatata 33929971  T

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