View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16741_low_9 (Length: 557)
Name: NF16741_low_9
Description: NF16741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16741_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 32680026 - 32679640
Alignment:
| Q |
18 |
gttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32680026 |
gttacttggttgtattagttttttagtgtgaactgccagaatgggaatgttgaagattaaacatgcgtgttttgtatgtgtgt--ttaacagcgagagtt |
32679929 |
T |
|
| Q |
118 |
tgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttgaactgtcatgtgt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679928 |
tgtatgaagacgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatataaggtattataattccgctcattatttgaactgtcatgtgt |
32679829 |
T |
|
| Q |
218 |
tctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
32679828 |
tctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaagataaca |
32679729 |
T |
|
| Q |
318 |
aacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
406 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32679728 |
aacaagtattgttggttttcatcctttatgggttgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct |
32679640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 380
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
| Q |
333 |
ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt |
380 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32679676 |
ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt |
32679630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 74 - 344
Target Start/End: Complemental strand, 28136291 - 28136025
Alignment:
| Q |
74 |
ttaaacatgcgtgttttgtatgtgtgtgtttaacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgta |
173 |
Q |
| |
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||||||||| ||| ||||||||| |||||| || || ||||||||||| ||||| |||| |||||||| ||||||||||||| || |||||||| ||| |
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| T |
28136291 |
ttaaacatgtgtggtttgtatgtatgtgttaaatagtgagagtttgtacgaagaggaggcctttgatcagcaccaaaggcaacttgccgcactactcgta |
28136192 |
T |
|
| Q |
174 |
tagaaggtattataattccgctcattatttgaactgtcatgtgttctattgaaaactgtgcgatgct-atttttgcatatatggagtctctttcttcatg |
272 |
Q |
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| |||||| ||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28136191 |
tccaaggtagtattgttctgctcattatttgaactgtcacatgttctattggtgactatgcgatgctgttttttgcatatatggagtctctttcttcatg |
28136092 |
T |
|
| Q |
273 |
tagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt |
344 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
28136091 |
t-----agctgttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt |
28136025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 28135930 - 28135839
Alignment:
| Q |
453 |
tggtttgtgttttggc-atctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
543 |
Q |
| |
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||||||||||||| | |||| ||||| ||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
28135930 |
tggtttgtgtttttactatctaattttttttcgctcctttatcttaggtattttattacttgggtgagctgaatgactcactatcctatgcc |
28135839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 451
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
| Q |
371 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
451 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||| |||||| ||| ||||| |||||||||||||| |||||||||||| |
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| T |
28136035 |
tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc |
28135955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 105 - 316
Target Start/End: Original strand, 44806585 - 44806795
Alignment:
| Q |
105 |
aacagcgagagtttgtatgaagatgaggagtttgatcattaccaaaggcaactcgctgcactacttgtatagaaggtattataattccgctcattatttg |
204 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| | ||||||||||| || ||| ||||||||| |||||| | || ||| |||||||||||| |
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| T |
44806585 |
aacagtgagagtttgtacgaagatgaggagtttgatcagcatcaaaggcaacttgccgcattacttgtatcaaaggtagtgta-ttctgctcattatttg |
44806683 |
T |
|
| Q |
205 |
aactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgat |
304 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
44806684 |
aattgtcacatgttctattgataactgtgcgatgctgtttttgcacatacggagtctctttcgtcaagtagctaagctgttatgatgtgttttacatgat |
44806783 |
T |
|
| Q |
305 |
atttgagataac |
316 |
Q |
| |
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|||||||||||| |
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| T |
44806784 |
atttgagataac |
44806795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 453 - 543
Target Start/End: Original strand, 44806913 - 44807003
Alignment:
| Q |
453 |
tggtttgtgttttggcatctgattttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
543 |
Q |
| |
|
|||||||| |||| | |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
44806913 |
tggtttgtattttagtatctgatttttcttcgctcctttatcttaggtcttttattacttgggcgagttgaatgactcactatcctatgcc |
44807003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
| Q |
371 |
tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca |
438 |
Q |
| |
|
|||||| |||| || ||||||| | |||||||||| |||||| |||| |||||||||||||||||||| |
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|
| T |
44806806 |
tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca |
44806873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 203 - 369
Target Start/End: Original strand, 2230444 - 2230609
Alignment:
| Q |
203 |
tgaactgtcatgtgttctattgaaaactgtgcgatgctatttttgcatatatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatg |
302 |
Q |
| |
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|||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2230444 |
tgaactgtcacatgttctattgataaccgagcgatgctgtttttgcatatatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatg |
2230543 |
T |
|
| Q |
303 |
atatttgagataacaaacaagtattgttggttttcatcctttgtgggttgtacctgacttctaaacc |
369 |
Q |
| |
|
|||||||||||| |||| || |||| | || |||||||||| | | ||||||||| |||||||||| |
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| T |
2230544 |
atatttgagatagcaaataaatattttcggccttcatccttt-ttgattgtacctggcttctaaacc |
2230609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 451
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
| Q |
372 |
ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc |
451 |
Q |
| |
|
|||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
2230576 |
ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc |
2230655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 475 - 543
Target Start/End: Original strand, 2230704 - 2230772
Alignment:
| Q |
475 |
ttttgttttgctccttaatcttaggtcttttattacttgggcgagctgaatgattcattatcctatgcc |
543 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
2230704 |
ttttttttcgctcctttatcttaggtctttaattacttgggcgagctgaatgactcactatcctatgcc |
2230772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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