View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_high_1 (Length: 930)
Name: NF16742_high_1
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 283 - 925
Target Start/End: Original strand, 54207857 - 54208494
Alignment:
| Q |
283 |
atttcaaagtcttaattttgctttatgttctaattaaaagttctgttaannnnnnnnnnnnnnngttccttactttctggatgaatttgattttcaactc |
382 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
54207857 |
atttcacagtcttaattttgctttatgttctaattaaaagttctgtta-----tttttttttttgttccttactttctggatgaatgtgattttcaactc |
54207951 |
T |
|
| Q |
383 |
aattaaccatttactataacattacttaccttttaacattattttgcttccacattccagtttatcatgaatttcttttttgtcgaattcggatagcatt |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54207952 |
aattaaccatttactataacattacttaccttttaacattattttgcttccacattccagtttatcatgaatttcttttttgtcgaattcggatagcatt |
54208051 |
T |
|
| Q |
483 |
gaaatacaacacttaattagtatcatgctgttgtgatttgtgaacaggtcgtggctattacggnnnnnnncttgctatgcattgcatattatgccttctt |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54208052 |
gaaatacaacacttaattagtatcatgctgttgtgatttgtgaacaggtcgtggctattacggtttttttcttgctatgcattgcatattatgccttctt |
54208151 |
T |
|
| Q |
583 |
tgctccttttcttggaaatgacatctttgaatacgtcgcttttggtgtttactctctactggtaagtaactatccgattcgtctctacgttccttttgtg |
682 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
54208152 |
tgctccttttcttggaaaggacatctttgaattcgtcgcttttggtgtttactctctactggtaagtaactatccgattcatctctacgttccttctgtg |
54208251 |
T |
|
| Q |
683 |
tttcattaaacaagagtgcggtactctttcatttacttgttcctcaattttgaactgcaggcactttctgtattctttctatatgttcgatgcactgcca |
782 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54208252 |
tttcattaaacaagagtgcggtactctttcatttacttgttcctcaattttgaactgcaggcactttctgtattctttctatatgttcgatgcactgcca |
54208351 |
T |
|
| Q |
783 |
ttgaccccgctgatctaggagtaatgattgattgcgataaaacatccaagaatagatcaaaacttgatgaagagttggcaggttggaattttatattatt |
882 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54208352 |
ttgaccccgctgatctaggagtaatgattgattgcgataaaacatccaagaatagatcaaaacttgatgaagagttggcaggttggaattttatattatt |
54208451 |
T |
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| Q |
883 |
gacatactcttcagatcagaatcaccttaatgattcatctcac |
925 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54208452 |
gacatactcttcagatcagaatcaccttaatgattcatctcac |
54208494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 54207595 - 54207701
Alignment:
| Q |
19 |
aaatgcttctgatttcttagtctgttactatcggagattgagaataatgggtagacgccatggatgggaactcccttttcacacttttcaggtacctcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54207595 |
aaatgcttctgatttcttagtctgttactatcggagattgagaataatgggtagacgccatggatgggaactcccttttcacacttttcaggtacctcct |
54207694 |
T |
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| Q |
119 |
gtactac |
125 |
Q |
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||||||| |
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| T |
54207695 |
gtactac |
54207701 |
T |
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Back To:
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