View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_high_13 (Length: 413)
Name: NF16742_high_13
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 1084257 - 1084649
Alignment:
| Q |
1 |
ttaattaagttgtttatccaaacagggaagagta--ctagtagtactaagaacacgtttctaattttgtattgcagatttcaagagatagttcccttgaa |
98 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084257 |
ttaattaagttgtttatccaaacagggaagagtatactagtagtactaagaacacgtttctaattttgtattgcagatttcaagagatagttcccttgaa |
1084356 |
T |
|
| Q |
99 |
tgctggtaatatcttaggggcagaagataatggccctgccaaaaaatggctagctctcattggaaatgctttaaacagtcttcccggtactagtggaggt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084357 |
tgctggtaatatcttaggggcagaagataatggccctgccaaaaaatggctagctctcattggaaatgctttaaacagtcttcccggtactagtggaggt |
1084456 |
T |
|
| Q |
199 |
aatggatactacacaccttctcctatacctcagccagtggtagaattgaatgccgattttgaaggatcagctaggcagaagaattcatcattcttccatc |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084457 |
aatggatactacacaccttctcctatacctcagccagtggtagaattgaatgccgattttgaaggatcagctaggcagaagaattcatcattcttccatc |
1084556 |
T |
|
| Q |
299 |
ggcgatccttccaaacaacttctagcagctggggaatggacaatgatccttcaaccgtgcaaccacgactagaccgaagattcagcgtctgtg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084557 |
ggcgatccttccaaacaacttctagcagctggggaatggacaatgatccttcaaccgtgcaaccacgactagaccgaagattcagcgtctgtg |
1084649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 69 - 364
Target Start/End: Original strand, 46763964 - 46764259
Alignment:
| Q |
69 |
ttgcagatttcaagagatagttcccttgaatgctggtaatatcttaggggcagaagataatggccctgccaaaaaatggctagctctcattggaaatgct |
168 |
Q |
| |
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|||||||||||||||||||||||| |||||||| ||||||||| |||||||||| || ||||||||||||||||||||||| ||||| || |||| || |
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| T |
46763964 |
ttgcagatttcaagagatagttccgttgaatgccggtaatatcctaggggcagaggacaatggccctgccaaaaaatggctggctcttatcagaaagact |
46764063 |
T |
|
| Q |
169 |
ttaaacagtcttcccggtactagtggaggtaatggatactacacaccttctcctatacctcagccagtggtagaattgaatgccgattttgaaggatcag |
268 |
Q |
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||||||| |||||| || || |||||| ||| ||||| ||| ||||| ||||| || ||||||||||| ||||| ||||||| |||||||| ||||||| |
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| T |
46764064 |
ttaaacaatcttcctggaaccagtggaagtagtggatgctatacaccgtctccaattcctcagccagttgtagagctgaatgcagattttgagggatcag |
46764163 |
T |
|
| Q |
269 |
ctaggcagaagaattcatcattcttccatcggcgatccttccaaacaacttctagcagctggggaatggacaatgatccttcaaccgtgcaaccac |
364 |
Q |
| |
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|||||||||||||||| || |||||||| ||||||| ||||| ||||||||||| | |||||||||||||||||||||||| |||||||||| |
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| T |
46764164 |
ctaggcagaagaattcgtctttcttccacaggcgatcattccagacaacttctagtggttggggaatggacaatgatccttcacttgtgcaaccac |
46764259 |
T |
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