View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_high_14 (Length: 395)
Name: NF16742_high_14
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 37986691 - 37986325
Alignment:
| Q |
13 |
tgaaatacgaccaaatgataagtaaattcagactaaaattgtttatgctaagatttaaactctagttctcttggatacttagtctttagccaaagttcat |
112 |
Q |
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| T |
37986691 |
tgaaatacgaccaaatgataagtaaattcagactgaaattgtttatgctaagatttaaactttagttctcttggatacttagtctttagccgaagttcat |
37986592 |
T |
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| Q |
113 |
taatcacttgaattaaattacactttgtttaaaccttatagtttgttctttggtgaataaaaagggttagaccttatggagtcaggaaatctagaataag |
212 |
Q |
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| T |
37986591 |
taatcacttgaattaaattacactttgtttaaatcttatagtttgttctttggtgaataaaaagggttagaccttatggagtcgggaaatctagaataag |
37986492 |
T |
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| Q |
213 |
aatcaaagataagtaaatttagactaaattcacttgagttggattagcgatgttgacttaaaacttcaaagtgtgttcctctaaaattcaagtttaatta |
312 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
37986491 |
aatcaaagataaataaatttagactaaactcacttgagttggattagcgatgttgacttaaaacttcaaagtgtgttcctttaagattcaagtttaatta |
37986392 |
T |
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| Q |
313 |
tcatcggtatcaattttggaggacaagtttgttttcttaaaaagaaattaaactcagactaaaaaac |
379 |
Q |
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| T |
37986391 |
tcatcggtatcaattttggaggacaagtttgttttcttaaaaagaaattaaactcagactaaaaaac |
37986325 |
T |
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