View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16742_high_15 (Length: 367)

Name: NF16742_high_15
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16742_high_15
NF16742_high_15
[»] chr3 (3 HSPs)
chr3 (59-102)||(10343327-10343370)
chr3 (57-101)||(53714485-53714529)
chr3 (34-99)||(50305451-50305516)
[»] chr1 (3 HSPs)
chr1 (44-99)||(4626333-4626388)
chr1 (57-102)||(13537002-13537047)
chr1 (59-99)||(45597624-45597664)
[»] chr4 (2 HSPs)
chr4 (56-99)||(49708730-49708773)
chr4 (56-100)||(17979119-17979163)
[»] chr7 (2 HSPs)
chr7 (57-99)||(36661685-36661727)
chr7 (43-99)||(29511311-29511367)
[»] chr2 (2 HSPs)
chr2 (58-100)||(5142561-5142603)
chr2 (56-100)||(2992860-2992904)
[»] chr8 (2 HSPs)
chr8 (62-99)||(8491468-8491505)
chr8 (67-99)||(45163133-45163165)
[»] chr5 (3 HSPs)
chr5 (62-99)||(6354696-6354733)
chr5 (67-99)||(6353684-6353716)
chr5 (58-98)||(18669867-18669907)


Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 10343370 - 10343327
Alignment:
Q  59 atggtggtaaaatcattccctcacccaccctaaatgccaccatc 102  Q
    ||||||| |||||| |||||||||||||||||||||||||||||    
T  10343370 atggtggaaaaatctttccctcacccaccctaaatgccaccatc 10343327  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 53714529 - 53714485
Alignment:
Q  57 ccatggtggtaaaatcattccctcacccaccctaaatgccaccat 101  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||    
T  53714529 ccatggtgggaaattctttccctcacccaccctaaatgccaccat 53714485  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 50305451 - 50305516
Alignment:
Q  34 tctaatgactaaaattaactgatccatggtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    |||||||  ||||||| |||  |||||||||| ||| || || |||||||||||||||||||||||    
T  50305451 tctaatggttaaaatttacttttccatggtgggaaattcttttcctcacccaccctaaatgccacc 50305516  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 4626333 - 4626388
Alignment:
Q  44 aaaattaactgatccatggtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    |||||||||||||||||||||| ||| |  ||||||| ||||||||||||||||||    
T  4626333 aaaattaactgatccatggtgggaaattttttccctctcccaccctaaatgccacc 4626388  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 13537002 - 13537047
Alignment:
Q  57 ccatggtggtaaaatcattccctcacccaccctaaatgccaccatc 102  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||    
T  13537002 ccatggtgggaaattctttccctcacccaccctaaatgccaccatc 13537047  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 45597664 - 45597624
Alignment:
Q  59 atggtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    ||||||| ||| || ||||||||||||||||||||||||||    
T  45597664 atggtgggaaattctttccctcacccaccctaaatgccacc 45597624  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 49708730 - 49708773
Alignment:
Q  56 tccatggtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    |||||||||| ||| || ||||||||||||||||||||||||||    
T  49708730 tccatggtgggaaattctttccctcacccaccctaaatgccacc 49708773  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 17979119 - 17979163
Alignment:
Q  56 tccatggtggtaaaatcattccctcacccaccctaaatgccacca 100  Q
    ||||| |||| ||| || |||||||||||||||||||||||||||    
T  17979119 tccatagtggaaaactctttccctcacccaccctaaatgccacca 17979163  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 36661727 - 36661685
Alignment:
Q  57 ccatggtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    ||||||||| ||| || ||||||||||||||||||||||||||    
T  36661727 ccatggtgggaaattctttccctcacccaccctaaatgccacc 36661685  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 29511367 - 29511311
Alignment:
Q  43 taaaattaactgatccatggtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    ||||||| |||  |||||||||  ||| || ||||||||||||||||||||||||||    
T  29511367 taaaatttacttttccatggtgagaaattctttccctcacccaccctaaatgccacc 29511311  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 5142561 - 5142603
Alignment:
Q  58 catggtggtaaaatcattccctcacccaccctaaatgccacca 100  Q
    |||||||| ||| || |||||||||||||||||||||||||||    
T  5142561 catggtggaaaattctttccctcacccaccctaaatgccacca 5142603  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 2992860 - 2992904
Alignment:
Q  56 tccatggtggtaaaatcattccctcacccaccctaaatgccacca 100  Q
    ||||| |||| ||| || |||||||||||||||||||||||||||    
T  2992860 tccatagtggaaaactctttccctcacccaccctaaatgccacca 2992904  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 8491505 - 8491468
Alignment:
Q  62 gtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  8491505 gtgggaaaatctttccctcacccaccctaaatgccacc 8491468  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 45163133 - 45163165
Alignment:
Q  67 aaaatcattccctcacccaccctaaatgccacc 99  Q
    |||||| ||||||||||||||||||||||||||    
T  45163133 aaaatctttccctcacccaccctaaatgccacc 45163165  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 6354696 - 6354733
Alignment:
Q  62 gtggtaaaatcattccctcacccaccctaaatgccacc 99  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  6354696 gtgggaaaatctttccctcacccaccctaaatgccacc 6354733  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 6353716 - 6353684
Alignment:
Q  67 aaaatcattccctcacccaccctaaatgccacc 99  Q
    |||||| ||||||||||||||||||||||||||    
T  6353716 aaaatctttccctcacccaccctaaatgccacc 6353684  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 18669907 - 18669867
Alignment:
Q  58 catggtggtaaaatcattccctcacccaccctaaatgccac 98  Q
    |||||||| ||| || |||||||||||||||||||||||||    
T  18669907 catggtgggaaactctttccctcacccaccctaaatgccac 18669867  T

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