View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16742_high_5 (Length: 489)
Name: NF16742_high_5
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 4271181 - 4271630
Alignment:
| Q |
13 |
gagatgaatgagcaaagcgagtgagacctagcccttgcgcttggcctaatgagcatctggtccaattttttgttgtgggggcgactgagggtgtgggatg |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4271181 |
gagacgaatgagcaaagcgagtgagacctagcccttgc---tggcctaatgaacatttggtccaattttttgttgtgggggcgactgagggtgtgggagg |
4271277 |
T |
|
| Q |
113 |
caaatgtcccacattacagttcactgtaaaccaaaatctttcgcaaataataaaatataattgccgctactttgtagtcggagatatagacacaattggc |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
4271278 |
caaaggtcccacattacagttcactgtaaaccaaaatctttcgcaaataataaaacataattgccgctactttgtagtcggagacatagacacatttggc |
4271377 |
T |
|
| Q |
213 |
tgaacttcattaccgaacgtcatgtgtttgtttgcgataactgttccgttaatcttttgtaccagcttgttgttctagc-aatgactaataatcttgatt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4271378 |
tgaacttcattaccgaacgtcatgtgtttgtttgtgataactgttccgttaatcttttgtaccag------attctagcaaatgactaataatcttgatt |
4271471 |
T |
|
| Q |
312 |
tatttgtatcatcgtaatatagttttctgtcatcctagcttcatctcatgaaaatggtggtatcaaatcaacatacaaggcaagtnnnnnnnnnnnnnnn |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4271472 |
tatttgtatcatcgtaatatagttttctgtcatcttagcttcatctcatgaaaatggtggtatcaaatcaacatacaaggcaagtgaaaacaaaaacaaa |
4271571 |
T |
|
| Q |
412 |
nctgattcagaaaggtattttaaaaaatgaatgataatgtaccatataactatgtcatt |
470 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4271572 |
actgattcagaaaggtattttgaaaaatgaatgataatgtaccatataactatgtcatt |
4271630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 31592834 - 31592893
Alignment:
| Q |
181 |
actttgtagtcggagatatagacacaattggctgaacttcattaccgaacgtcatgtgtt |
240 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| ||||||||| ||| ||| ||||||||| |
|
|
| T |
31592834 |
actttgtagttggagagatagacacaattggccgaacttcataaccaaacatcatgtgtt |
31592893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University