View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_high_7 (Length: 449)
Name: NF16742_high_7
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 487810 - 488229
Alignment:
| Q |
12 |
acagacactcacacttgtaggagtcggacaccagaaacactttcaattcaaagtattggtgctacaatatataccataaaataaatgaaaaacactgata |
111 |
Q |
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| T |
487810 |
acagacactcacacttgtaggagtcggacaccagaaacactttcaattcaaagtattggtgctacaatatataccataaaataaatgaaaaacactgata |
487909 |
T |
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| Q |
112 |
tacaatctccaaacaacttactttgccgatttctgagaaagcacaagtagcaaatgaaaattattatgaccaagcctaccccaactgcaatgactgtaat |
211 |
Q |
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| T |
487910 |
tacaatctccaaacaacttactttgccgatttctgagaaagcacaagtagcaaatgaaaattattatgaccaagcctaccccaactgcaatgactgtaat |
488009 |
T |
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| Q |
212 |
catccatattttgcttgaattatctgcacaaaagatcaatcaaaactagctttgacagaatgtttaagaattgtattgcaacttgagaaatgcttacttt |
311 |
Q |
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| T |
488010 |
catccatattttgcttgaattatctgcacaaaagatcaatcaaaactagctttgacagaatgtttaagaattgtattgcaacttgagaaatgcttacttt |
488109 |
T |
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| Q |
312 |
tccctcctaggttggtagaagactttgtttgttctttttcaccaagataaaatggatagaattcatatctcagataacagctacgactcataactctcgc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
488110 |
tccctcctaggttggtagaagactttgtttgttctttttcaccaagataaaatggatagaattcatatctcagataacagctgcgactcataactctcgc |
488209 |
T |
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| Q |
412 |
accaatggaggcataacagc |
431 |
Q |
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| T |
488210 |
accaatggaggcataacagc |
488229 |
T |
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