View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16742_low_10 (Length: 432)

Name: NF16742_low_10
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16742_low_10
NF16742_low_10
[»] chr2 (3 HSPs)
chr2 (321-410)||(18937226-18937315)
chr2 (96-216)||(27955553-27955672)
chr2 (138-216)||(31634679-31634757)
[»] chr8 (3 HSPs)
chr8 (109-216)||(42890964-42891071)
chr8 (132-216)||(42891109-42891193)
chr8 (109-214)||(23571070-23571174)
[»] chr3 (2 HSPs)
chr3 (109-216)||(43306193-43306300)
chr3 (216-252)||(52126884-52126920)
[»] chr6 (2 HSPs)
chr6 (144-214)||(8048392-8048462)
chr6 (109-181)||(14239052-14239124)
[»] chr4 (13 HSPs)
chr4 (132-203)||(7723748-7723819)
chr4 (216-252)||(14210456-14210492)
chr4 (216-252)||(14211425-14211461)
chr4 (216-252)||(14212376-14212412)
chr4 (216-252)||(14213345-14213381)
chr4 (216-252)||(14214313-14214349)
chr4 (216-252)||(14215282-14215318)
chr4 (216-252)||(14218153-14218189)
chr4 (216-252)||(14219123-14219159)
chr4 (216-252)||(14220092-14220128)
chr4 (216-252)||(14221043-14221079)
chr4 (216-252)||(14222012-14222048)
chr4 (216-252)||(14222981-14223017)
[»] chr1 (1 HSPs)
chr1 (153-216)||(13443426-13443489)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 321 - 410
Target Start/End: Complemental strand, 18937315 - 18937226
Alignment:
Q  321 tttaaatcactcgaaggtttgttccaaaatgttttttcaataccatttttgttaaagtaatattttagattgcaacaaatatatgaaacg 410  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18937315 tttaaattactcgaaggtttgttccaaaatgttttttcaataccatttttgttaaagtaatattttagattgcaacaaatatatgaaacg 18937226  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 27955553 - 27955672
Alignment:
Q  96 taacaataggatgcggtgaccaaatgttcttcgatcggtttcacagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcg 195  Q
    |||||||||| | |||||||  |||||||||| |  |||| ||||||||||| ||| ||||||||||||| |||||||||||| || |||||||||||||    
T  27955553 taacaataggtt-cggtgactgaatgttcttcaactggttccacagacgtcgaaaacgcttcggtcgtccgagcaacgtcgatatcctctttcaacggcg 27955651  T
Q  196 taagaattcttagaatatatg 216  Q
    |||||| ||||||||||||||    
T  27955652 taagaaatcttagaatatatg 27955672  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 31634757 - 31634679
Alignment:
Q  138 acagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaattcttagaatatatg 216  Q
    ||||| |||| ||| |||||| ||| || ||||| |||||| || ||||||||||||||||||| ||||||||||||||    
T  31634757 acagatgtcgaaaacgcttcgatcgaccgagcaaagtcgatgtcctctttcaacggcgtaagaaatcttagaatatatg 31634679  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 42891071 - 42890964
Alignment:
Q  109 cggtgaccaaatgttcttcgatcggtttcacagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaattcttag 208  Q
    |||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  42891071 cggtgactgaatgttcttcgaccggtttcacagacgtcggaaacgcttcggtcgtccgagcaacgtcgatctcctctttcaacgtcgtaagaattcttag 42890972  T
Q  209 aatatatg 216  Q
    ||||||||    
T  42890971 aatatatg 42890964  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 42891109 - 42891193
Alignment:
Q  132 ggtttcacagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaattcttagaatatatg 216  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  42891109 ggtttcacagacgtcggaaacgcttcggtcgtacgagcaacgtcgatctcctctttcaacgtcgtaagaattcttagaatatatg 42891193  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 23571174 - 23571070
Alignment:
Q  109 cggtgaccaaatgttcttcgatcggtttcacagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaattcttag 208  Q
    |||||||  |||| ||||| | ||||| |||| |||||||||| ||||| ||||||| || | |||||||||| ||||||||||||||||||||||||||    
T  23571174 cggtgactgaatgatcttcaaccggttccaca-acgtcggaaacgcttcagtcgtccgagaagcgtcgatctcctctttcaacggcgtaagaattcttag 23571076  T
Q  209 aatata 214  Q
    ||||||    
T  23571075 aatata 23571070  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 43306193 - 43306300
Alignment:
Q  109 cggtgaccaaatgttcttcgatcggtttcacagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaattcttag 208  Q
    |||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  43306193 cggtgactgaatgttcttcgaccggtttcacagacgtcggaaacgcttcggtcgtccgagcaacgtcgatctcctctttcaacgtcgtaagaattcttag 43306292  T
Q  209 aatatatg 216  Q
    ||||||||    
T  43306293 aatatatg 43306300  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 52126920 - 52126884
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  52126920 gggtaagcatgtttgctaggattagatataaaggatt 52126884  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 8048392 - 8048462
Alignment:
Q  144 gtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaattcttagaatata 214  Q
    |||||||| |||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  8048392 gtcggaaacgcttcggtcgtccttgcaacgtcgatctcctctttcagcggcgtaagaattcttagaatata 8048462  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 14239124 - 14239052
Alignment:
Q  109 cggtgaccaaatgttcttcgatcggtttcacagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctc 181  Q
    |||||||  |||||| ||||| |||||||||||| |||| ||| |||| ||| |||| |||||||||||||||    
T  14239124 cggtgactgaatgtttttcgaccggtttcacagatgtcgaaaacgctttggtagtccgagcaacgtcgatctc 14239052  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 7723748 - 7723819
Alignment:
Q  132 ggtttcacagacgtcggaaaggcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaatt 203  Q
    |||| ||||||||||||||| ||||||||||||  ||||||||||||||| |||| ||||||| ||||||||    
T  7723748 ggttccacagacgtcggaaacgcttcggtcgtctgagcaacgtcgatctcctcttgcaacggcataagaatt 7723819  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14210456 - 14210492
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14210456 gggtaagcatgtttgctaggattagatataaaggatt 14210492  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14211425 - 14211461
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14211425 gggtaagcatgtttgctaggattagatataaaggatt 14211461  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14212376 - 14212412
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14212376 gggtaagcatgtttgctaggattagatataaaggatt 14212412  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14213345 - 14213381
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14213345 gggtaagcatgtttgctaggattagatataaaggatt 14213381  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14214313 - 14214349
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14214313 gggtaagcatgtttgctaggattagatataaaggatt 14214349  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14215282 - 14215318
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14215282 gggtaagcatgtttgctaggattagatataaaggatt 14215318  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14218153 - 14218189
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14218153 gggtaagcatgtttgctaggattagatataaaggatt 14218189  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14219123 - 14219159
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14219123 gggtaagcatgtttgctaggattagatataaaggatt 14219159  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14220092 - 14220128
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14220092 gggtaagcatgtttgctaggattagatataaaggatt 14220128  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14221043 - 14221079
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14221043 gggtaagcatgtttgctaggattagatataaaggatt 14221079  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14222012 - 14222048
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14222012 gggtaagcatgtttgctaggattagatataaaggatt 14222048  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14222981 - 14223017
Alignment:
Q  216 gggtaagtatatttgctaggattagatataaaggatt 252  Q
    ||||||| || ||||||||||||||||||||||||||    
T  14222981 gggtaagcatgtttgctaggattagatataaaggatt 14223017  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 13443426 - 13443489
Alignment:
Q  153 gcttcggtcgtccaagcaacgtcgatctcttctttcaacggcgtaagaattcttagaatatatg 216  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  13443426 gcttcggtcgtcagagcaacgtcgatctcctctttcaacgtcgtaagaattcttataatatatg 13443489  T

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