View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16742_low_12 (Length: 423)

Name: NF16742_low_12
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16742_low_12
NF16742_low_12
[»] chr8 (20 HSPs)
chr8 (220-410)||(19290171-19290361)
chr8 (174-408)||(19169815-19170049)
chr8 (156-410)||(19357963-19358215)
chr8 (156-410)||(19339940-19340192)
chr8 (173-410)||(19499838-19500075)
chr8 (247-398)||(19399696-19399847)
chr8 (174-410)||(19536750-19536986)
chr8 (191-410)||(19348925-19349144)
chr8 (243-410)||(19479970-19480137)
chr8 (243-410)||(19550894-19551061)
chr8 (243-410)||(19581627-19581794)
chr8 (174-410)||(19379990-19380226)
chr8 (243-410)||(19407964-19408131)
chr8 (243-410)||(19416044-19416211)
chr8 (243-410)||(19454984-19455151)
chr8 (243-410)||(19486119-19486286)
chr8 (243-410)||(19525926-19526093)
chr8 (248-410)||(19258154-19258316)
chr8 (247-407)||(19274164-19274322)
chr8 (321-389)||(19148607-19148675)
[»] chr1 (1 HSPs)
chr1 (288-408)||(36310790-36310910)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 220 - 410
Target Start/End: Complemental strand, 19290361 - 19290171
Alignment:
Q  220 gaataggtgtcagtatcaagacgtttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19290361 gaataggtgtcagtatcaagacgtttagaagttgtttccccttcaaagatctctcttctaacataaaatgccggtcttcttggtaaggttgtgagttcat 19290262  T
Q  320 atttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  19290261 atttgtttgctaacattgatatcacatccgacattgtaggacgatcatttgcatattgttctacacataagataccaacatgaatgcacct 19290171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 174 - 408
Target Start/End: Original strand, 19169815 - 19170049
Alignment:
Q  174 ttatatttgtccttccacttcacatgaagtggaaattgcggtcatggaataggtgtcagtatcaagacgtttagaagttgtttccccttcaaagatctct 273  Q
    ||||||||  ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| || | ||||||||||||||||||||| |||||||||    
T  19169815 ttatattttcccttctacttcacatgatgtagaaattgcagtcatagaataggtgtcagtatctagccctttagaagttgtttccccttcgaagatctct 19169914  T
Q  274 cttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgcat 373  Q
    ||  ||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  19169915 ctggtaacataaaatgctggtcttcttggtaaggttgtcggtgcgtatttgtttgttaacattgatataacatcagacattgtaggtcgattatttgcat 19170014  T
Q  374 attgttctacacataagagaccaacatggatgcac 408  Q
    |||||||||||||||||||||||||||| ||||||    
T  19170015 attgttctacacataagagaccaacatgaatgcac 19170049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 156 - 410
Target Start/End: Complemental strand, 19358215 - 19357963
Alignment:
Q  156 caatatttattgattactttatatttgtccttccacttcacatgaagtggaaattgcggtcatggaataggtgtcagtatcaagacgtttagaagttgtt 255  Q
    |||||| |||||||||||| |||||| |||||| ||||||||||| || |||||||| ||| | ||||||||||| || ||  | | |||||||||||||    
T  19358215 caatatatattgattactt-atattt-tccttctacttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtctggccctttagaagttgtt 19358118  T
Q  256 tccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattg 355  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  19358117 tccccgtcatagatctctcttctaatatagaatgctggtcttcttggtaaagttgtgagttcatatttgtttgttaacattgatataacatcggacattg 19358018  T
Q  356 taggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||||||||||| |||||||||| |||||||||||||||||| || ||||||||    
T  19358017 taggtcgatcattagcatattgttgtacacataagagaccaacgtgaatgcacct 19357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 156 - 410
Target Start/End: Complemental strand, 19340192 - 19339940
Alignment:
Q  156 caatatttattgattactttatatttgtccttccacttcacatgaagtggaaattgcggtcatggaataggtgtcagtatcaagacgtttagaagttgtt 255  Q
    |||||| |||||||||||| |||||| |||||| ||||||||||| || |||||||| ||| | ||||||||||| || ||  | | |||||||||||||    
T  19340192 caatatatattgattactt-atattt-tccttctacttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtctggccctttagaagttgtt 19340095  T
Q  256 tccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattg 355  Q
    ||||| ||| ||||||||||||||| ||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  19340094 tccccgtcatagatctctcttctaatatagaatgccggtcttcttggtaaagttgtgagtttatatttgtttgttaacattgatataacatcggacattg 19339995  T
Q  356 taggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  19339994 taggtcgatcattagcatattgttgtacacataagagaccaacatgaatgcacct 19339940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 173 - 410
Target Start/End: Original strand, 19499838 - 19500075
Alignment:
Q  173 tttatatttgtccttccacttcacatgaagtggaaattgcggtcatggaataggtgtcagtatcaagacgtttagaagttgtttccccttcaaagatctc 272  Q
    |||||||||  ||||| ||||||||||| || |||||||| ||| | ||||||||||| || ||  | | |||||||||||||||||| |||||||||||    
T  19499838 tttatattttcccttctacttcacatgaggtagaaattgctgtcgtagaataggtgtcggtgtcttgccctttagaagttgtttccccctcaaagatctc 19499937  T
Q  273 tcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgca 372  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||| |||||| || || |||||||||||||||| |||||||    
T  19499938 tcttctaacataaaatgctggccttcttggcaagtttgtgagttcatatttgtttgtcaacactgatataacttcagacattgtaggtcgattatttgca 19500037  T
Q  373 tattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  19500038 tattgttctacacataagagaccaacatgaatgcacct 19500075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 247 - 398
Target Start/End: Complemental strand, 19399847 - 19399696
Alignment:
Q  247 gaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacat 346  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19399847 gaagttgtttccccttcaaagatctctcgtctaatataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgctaacattgatatcacat 19399748  T
Q  347 ccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaac 398  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19399747 ccgacattgtaggtcgatcatttgcatattgttctacacacaagagaccaac 19399696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 174 - 410
Target Start/End: Original strand, 19536750 - 19536986
Alignment:
Q  174 ttatatttgtccttccacttcacatgaagtggaaattgcggtcatggaataggtgtcagtatcaagacgtttagaagttgtttccccttcaaagatctct 273  Q
    ||||||||  ||||| ||||||||||| |  |||||||  ||| | ||||||||||| || ||    | ||| |||||||||||||| |||||||| | |    
T  19536750 ttatattttcccttctacttcacatgaggaagaaattgttgtcgtagaataggtgtcggtgtctttccctttggaagttgtttccccctcaaagatattt 19536849  T
Q  274 cttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgcat 373  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  19536850 cttctaacatagaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatataacatcagacattgtaggtcgatcatttgcat 19536949  T
Q  374 attgttctacacataagagaccaacatggatgcacct 410  Q
    | |||||||||||||||||||||||||| ||||||||    
T  19536950 aatgttctacacataagagaccaacatgaatgcacct 19536986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 191 - 410
Target Start/End: Complemental strand, 19349144 - 19348925
Alignment:
Q  191 cttcacatgaagtggaaattgcggtcatggaataggtgtcagtatcaagacgtttagaagttgtttccccttcaaagatctctcttctaacataaaatgc 290  Q
    ||||||||||||| |||||||| ||| | ||||||||||| || ||  | | ||| ||| |||||||||| |||||||||||||||||||||||||||||    
T  19349144 cttcacatgaagtagaaattgctgtcgtagaataggtgtcggtgtcttgccctttggaaattgtttccccctcaaagatctctcttctaacataaaatgc 19349045  T
Q  291 tggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgcatattgttctacacataag 390  Q
    |||||||||||||||| |||||||||  ||||||||||||||||  ||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||    
T  19349044 tggtcttcttggtaagtttgtgagttggtatttgtttgttaacacagatataacatcagacattgttggtcgatcatttgcatattgctctacacataag 19348945  T
Q  391 agaccaacatggatgcacct 410  Q
    ||||||||||| ||||||||    
T  19348944 agaccaacatgaatgcacct 19348925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 243 - 410
Target Start/End: Original strand, 19479970 - 19480137
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| || ||||  || ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||     
T  19479970 tttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatata 19480069  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19480070 acatcagacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19480137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 243 - 410
Target Start/End: Original strand, 19550894 - 19551061
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| || ||||  || ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||     
T  19550894 tttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatata 19550993  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19550994 acatcagacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19551061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 19581794 - 19581627
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| || ||||  || ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||     
T  19581794 tttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatata 19581695  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19581694 acatcggacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19581627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 174 - 410
Target Start/End: Complemental strand, 19380226 - 19379990
Alignment:
Q  174 ttatatttgtccttccacttcacatgaagtggaaattgcggtcatggaataggtgtcagtatcaagacgtttagaagttgtttccccttcaaagatctct 273  Q
    ||||||||  ||||| |||||| |||| || |||||||  ||| | ||||||||||| || ||  | | |||||||||||||||||| ||||||||||||    
T  19380226 ttatattttcccttctacttcaaatgaggtagaaattgttgtcgtagaataggtgtcggtgtcttgccctttagaagttgtttccccctcaaagatctct 19380127  T
Q  274 cttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgcat 373  Q
    ||||||||||| ||||||||| ||||||| ||| |||||||| ||||||||||||| |||| |||||| || || |||||||||||||||||||| ||||    
T  19380126 cttctaacatagaatgctggttttcttggcaagtttgtgagtacatatttgtttgtcaacactgatataacttcagacattgtaggtcgatcattagcat 19380027  T
Q  374 attgttctacacataagagaccaacatggatgcacct 410  Q
    |||||||||||||||||||||||||||| ||||||||    
T  19380026 attgttctacacataagagaccaacatgaatgcacct 19379990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 19408131 - 19407964
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| |  ||||  || ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||     
T  19408131 tttagaagttgtttctctatcaagaatgtctcttctaacataaaatgctggtcttctaggtattgttgtgagttcatatttgtttgttaacattgatata 19408032  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19408031 acatcagacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19407964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 19416211 - 19416044
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| || ||||  || ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||| |||     
T  19416211 tttagaagttgtttctccatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgctata 19416112  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19416111 acatcagacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19416044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 19455151 - 19454984
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| |  ||||  || ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||     
T  19455151 tttagaagttgtttctctatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatata 19455052  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19455051 acatcagacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19454984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 243 - 410
Target Start/End: Complemental strand, 19486286 - 19486119
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| || ||||  || || |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||     
T  19486286 tttagaagttgtttctccatcaagaatgtcccttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatata 19486187  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19486186 acatcagacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19486119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 243 - 410
Target Start/End: Original strand, 19525926 - 19526093
Alignment:
Q  243 tttagaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatc 342  Q
    ||||||||||||||| |  ||||  || ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||     
T  19525926 tttagaagttgtttctctatcaagaatgtctcttctaacataaaatgctggtcttctgggtattgttgtgagttcatatttgtttgttaacattgatata 19526025  T
Q  343 acatccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19526026 acatcagacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatgaatgcacct 19526093  T

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Target: chr8; HSP #18
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 248 - 410
Target Start/End: Complemental strand, 19258316 - 19258154
Alignment:
Q  248 aagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatc 347  Q
    |||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| |||||    
T  19258316 aagttgtttccccttcaaggatctctcttgtaaaatagaatgctggtcttcttggcatggttgtgagttcatatttgtttgttaacactgatataacatc 19258217  T
Q  348 cgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgcacct 410  Q
     |||||||| ||||||||||||||||| || || | |||||||||||||||||| ||||||||    
T  19258216 agacattgttggtcgatcatttgcataatgctcaatacataagagaccaacatgaatgcacct 19258154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 247 - 407
Target Start/End: Original strand, 19274164 - 19274322
Alignment:
Q  247 gaagttgtttccccttcaaagatctctcttctaacataaaatgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacat 346  Q
    |||||||||||||| |||||||| |||||||||||||| ||  || || ||||||||||||||||||||||||||||||||||||||| ||| || ||||    
T  19274164 gaagttgtttccccgtcaaagatttctcttctaacatagaacccttgttttcttggtaaggttgtgagttcatatttgtttgttaacaatgacataacat 19274263  T
Q  347 ccgacattgtaggtcgatcatttgcatattgttctacacataagagaccaacatggatgca 407  Q
    | |||||||| ||| |||  |||||| | || || |||||| ||||||||||||| |||||    
T  19274264 cagacattgttggttgat--tttgcaaactgctcaacacatgagagaccaacatgaatgca 19274322  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 19148607 - 19148675
Alignment:
Q  321 tttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgcatattgttctacacataa 389  Q
    |||||| |||||||||||||| ||||  |||||||| || ||||||| ||||| || |||||| |||||    
T  19148607 tttgttagttaacattgatataacattggacattgtcggacgatcatctgcattttcttctacgcataa 19148675  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 36310790 - 36310910
Alignment:
Q  288 tgctggtcttcttggtaaggttgtgagttcatatttgtttgttaacattgatatcacatccgacattgtaggtcgatcatttgcatattgttctacacat 387  Q
    |||||| ||||| ||| |||||| |||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||    
T  36310790 tgctggccttctcggtgaggttgggagttcatgtttgtttgttaacattgatataacatcagacattgttggtcgatcatttgcatattgttctacacat 36310889  T
Q  388 aagagaccaacatggatgcac 408  Q
    |||||||||||||| ||||||    
T  36310890 aagagaccaacatgaatgcac 36310910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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