View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_low_13 (Length: 419)
Name: NF16742_low_13
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_low_13 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 37870117 - 37870412
Alignment:
| Q |
1 |
cagttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacaaaggtaactggggtgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37870117 |
cagttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacagaggtaactggggtgtt |
37870216 |
T |
|
| Q |
101 |
gctgagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatccagctgcagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37870217 |
gctgagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatccagctgcagaga |
37870316 |
T |
|
| Q |
201 |
attaatgcatatatg---ttacctaatac---ctacatgtgtgtatatttcattgtttatttctctagattatcatttattacgttagtattaatt |
290 |
Q |
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||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37870317 |
attaatgcatatatgtaattacctaatacctactacatgtgtatatatttccttgtttatttctctagattatcatttattacgttagtattaatt |
37870412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 37861934 - 37862135
Alignment:
| Q |
1 |
cagttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacaaaggtaactggggtgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||| |
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| T |
37861934 |
cagttgcttcacatctaagaataagtatagagcggggtactatgatgattgcgggcgcaagacttggcctagcgatgatgacaaaggtaactggggtgtt |
37862033 |
T |
|
| Q |
101 |
gctgagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatccagctgcagaga |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||| |||| |
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| T |
37862034 |
gcagagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgcatttcagaatccgaacgttatcaagttgatccgtctgctgaga |
37862133 |
T |
|
| Q |
201 |
at |
202 |
Q |
| |
|
|| |
|
|
| T |
37862134 |
at |
37862135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 37883790 - 37883981
Alignment:
| Q |
4 |
ttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacaaaggtaactggggtgttgct |
103 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| ||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
37883790 |
ttgcttcacatctaagaataagtctagggcaggatactatgatgattgtgggcgcaagacttggcctagcgatgaagacaaaggtaactggggtgttgct |
37883889 |
T |
|
| Q |
104 |
gagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatccagctgc |
195 |
Q |
| |
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||||| || ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| ||||| |
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| T |
37883890 |
gagcccaatattaacaggagagctaaagatttcatccgcaaatacaagaatcacatatcagaatccgaatgctatcaagttgatccggctgc |
37883981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 290 - 409
Target Start/End: Original strand, 37870616 - 37870735
Alignment:
| Q |
290 |
ttttatgtatgtctgtaattgtgtgaagttagttccgaaccgagtgatcatataattaacttccaattatgcctctttgggtttgtttcttcacaaagtt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37870616 |
ttttatgtatgtctgtaattgtgtgaagttagttccgaaccgagtgatcatataattaacttccaattatgcctctttgggtttgtttcttcacaaagtt |
37870715 |
T |
|
| Q |
390 |
caattaaactgcatcctttg |
409 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
37870716 |
caattaaactgcatcctttg |
37870735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 37914690 - 37914955
Alignment:
| Q |
7 |
cttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacaaaggtaactggggtgttgctgag |
106 |
Q |
| |
|
||||| ||| |||||||||||||||||||| |||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
37914690 |
cttcaaatcaaagaataagtctagagcaggatactatgatgattgcggatgcaagacatggcctagcgatgaagacaaaggtaactggggtgttgctgag |
37914789 |
T |
|
| Q |
107 |
cctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatccagctgcagagaattaat |
206 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||| || ||| |
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| T |
37914790 |
cccaatattaacagcagagctgaagatttcatccgcaaatacaagaatcgcatatcagaatccgaacgctatcaagttgatccggctgcctag----aat |
37914885 |
T |
|
| Q |
207 |
gcatatatgttacctaataccta-catgtgtgtatatttcattgtttatttctctagattatcatttatta |
276 |
Q |
| |
|
||||| || || | ||| || ||| ||| |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
37914886 |
gcata-atactattgattacgtaccatatgtatatatttcattgtttatttctctaaattatcatttatta |
37914955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 8919845 - 8919810
Alignment:
| Q |
240 |
tatttcattgtttatttctctagattatcatttatt |
275 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
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| T |
8919845 |
tatttcattgtttatttctctatattatcatttatt |
8919810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 13699 - 13884
Alignment:
| Q |
4 |
ttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacaaaggtaactggggtgttgct |
103 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||||||||| |||||||| | ||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
13699 |
ttgcttcacatctaaaaataagtatagatcagggtactatgatgattgcggacgcaagacatggcctagcgatgaagacaaaggtaactggggtgttgct |
13798 |
T |
|
| Q |
104 |
gagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
13799 |
gagcctaacattaacaggagagctgaagatttcatccgcaaatgcaagaatcgcatttcagaatccgatagctatcaagttgatcc |
13884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 24027 - 24212
Alignment:
| Q |
4 |
ttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacaaaggtaactggggtgttgct |
103 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||||||||| |||||||| | ||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
24027 |
ttgcttcacatctaaaaataagtatagatcagggtactatgatgattgcggacgcaagacatggcctagcgatgaagacaaaggtaactggggtgttgct |
24126 |
T |
|
| Q |
104 |
gagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
24127 |
gagcctaacattaacaggagagctgaagatttcatccgcaaatgcaagaatcgcatttcagaatccgatagctatcaagttgatcc |
24212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 4086 - 3898
Alignment:
| Q |
4 |
ttgcttcacatctaagaataagtctagagcagggtactatgacgattgcgggcacaagatttggcatagcgatgaagacaaaggtaactggggtgttgct |
103 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| ||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4086 |
ttgcttcacatctaagaataagtctagggcaggatactatgatgattgtgggcgcaagacttggcctagcgatgaagacaaaggtaactggggtgttgct |
3987 |
T |
|
| Q |
104 |
gagcctaacattaacaggagagctgaagatttcatccgcaaatacaagaatcgagtttcagaatccgagcgctatcaagttgatccagc |
192 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| || ||||||||||||||||| |
|
|
| T |
3986 |
gagcccaatattaacaggagagctgaagatttcatccgcagatacaagaatcgcatctcagaatccgaacgttatcaagttgatccagc |
3898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 3091173 - 3091121
Alignment:
| Q |
238 |
tatatttcattgtttatttctctagattatcatttattacgttagtattaatt |
290 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| |||| ||| |||| |
|
|
| T |
3091173 |
tatattttattgtttatttctctagattattatttattaagttaatatcaatt |
3091121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 276
Target Start/End: Complemental strand, 11775688 - 11775650
Alignment:
| Q |
238 |
tatatttcattgtttatttctctagattatcatttatta |
276 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
11775688 |
tatatttcattgtttatttctccaaattatcatttatta |
11775650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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