View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_low_24 (Length: 239)
Name: NF16742_low_24
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42221736 - 42221514
Alignment:
| Q |
1 |
gttgaggccttgttgtgttggagtgagtagtaagtatttttgtggaagtgttgatgagaataatgttaagaaatatttggtttgtgagaaacctaaatct |
100 |
Q |
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| T |
42221736 |
gttgaggccttgttgtgttggagtaagtagtaagtatttttgtggaagtgttgatgagaataatgttaagaaatatttggtttgtgagaaacctaaatct |
42221637 |
T |
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| Q |
101 |
gctttcttttgggatttggttcatcctacggaggcagggtggcatgctgtttataacaagcttcgaataatgaatgctcttcaacagattcacgactaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221636 |
gctttcttttgggatttggttcatcctacggaggcagggtggcatgctgtttataacaagcttcgaataatgaatgctcttcaacagattcacgactaga |
42221537 |
T |
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| Q |
201 |
tacaaatcaaatagtgctaagat |
223 |
Q |
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| T |
42221536 |
tacaaatcaaatagtgctaagat |
42221514 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 26323598 - 26323645
Alignment:
| Q |
40 |
ttgtggaagtgttgatgagaataatgttaagaaatatttggtttgtga |
87 |
Q |
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| T |
26323598 |
ttgtggaagtgtagacgagaataatgttaagaaatatttggtttgtga |
26323645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 26329734 - 26329790
Alignment:
| Q |
59 |
aataatgttaagaaatatttggtttgtgagaaacctaaatctgctttcttttgggat |
115 |
Q |
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||||| ||||||||||||||||||||||| || ||| |||| |||||||||||||| |
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| T |
26329734 |
aataaggttaagaaatatttggtttgtgaaaatcctgaatcaactttcttttgggat |
26329790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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