View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_low_25 (Length: 228)
Name: NF16742_low_25
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 36523252 - 36523458
Alignment:
| Q |
13 |
agcagagaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattc---------cccaagtaatgtaattc |
103 |
Q |
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| T |
36523252 |
agcagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattc |
36523351 |
T |
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| Q |
104 |
acagatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagcc |
203 |
Q |
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| T |
36523352 |
acagatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagcc |
36523451 |
T |
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| Q |
204 |
acactgg |
210 |
Q |
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||||||| |
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| T |
36523452 |
acactgg |
36523458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 36530092 - 36530288
Alignment:
| Q |
20 |
aggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattcc---------ccaagtaatgtaattcacagatc |
110 |
Q |
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| T |
36530092 |
aggatgtaagtatgtctagcccaccatgctttgaactttctataaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatc |
36530191 |
T |
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| Q |
111 |
tcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacac |
207 |
Q |
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| T |
36530192 |
tcacaggtgggatgtcagatgcacctgcaatgataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacac |
36530288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 36535701 - 36535900
Alignment:
| Q |
17 |
gagaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattcc---------ccaagtaatgtaattcacag |
107 |
Q |
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| T |
36535701 |
gagagaatataagtatgtctagcccaccaaactctgaactttctataaacatagaaattgaaaaacattccaacaattccccaagtaatataattcacag |
36535800 |
T |
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| Q |
108 |
atctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacac |
207 |
Q |
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| T |
36535801 |
atctcctgggaggaatagtagatgcacctacaatgataataggaatgttgataagtttaatccacttgtggttaggaaatttgatagaaagaagccacac |
36535900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 42060132 - 42060071
Alignment:
| Q |
17 |
gagaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaa |
78 |
Q |
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| T |
42060132 |
gagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaa |
42060071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 42084009 - 42083948
Alignment:
| Q |
17 |
gagaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaa |
78 |
Q |
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| T |
42084009 |
gagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaa |
42083948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 42075429 - 42075368
Alignment:
| Q |
17 |
gagaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaa |
78 |
Q |
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| T |
42075429 |
gagagaatgtaagtgtgtctagcccaccataccttgaattttttgtaaacatagatattgaa |
42075368 |
T |
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