View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16742_low_4 (Length: 510)
Name: NF16742_low_4
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Complemental strand, 3217950 - 3217461
Alignment:
| Q |
16 |
aaaacattattcaacacttaagacatagcatcatcatgatttccttaattgatgtctatcatgtagtaacagccactgtcccattatatgtaactatgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217950 |
aaaacattattcaacacttaagacatagcatcatcatgatttccttaattgatgtctatcatgtagtaacagccactgtcccattatatgtaactatgtt |
3217851 |
T |
|
| Q |
116 |
actagcatacatttgtgttaaatggtggaaacttttcacaccagatcaatgtgcaggcataaacaaatttgtagcaaatttttcagttccattgttatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217850 |
actagcatacatttgtgttaaatggtggaaacttttcacaccagatcaatgtgcaggcataaacaaatttgtagcaaatttttcagttccattgttatca |
3217751 |
T |
|
| Q |
216 |
tttcaagtgatatcttcaaataacatttacaaaatgagtcttaaacttatatatgcagattgtgttcaaaaatttcttgcatttttagtcttgattgtta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217750 |
tttcaagtgatatcttcaaataacatttacaaaatgagtcttaaacttatatatgcagattgtgttcaaaaatttcttgcatttttagtcttgattgtta |
3217651 |
T |
|
| Q |
316 |
ttattaagattagtgatattagaggaggtttgaaatggattataactggtctttcattatcaacacttcctaatactttgatccttggaattccactcat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217650 |
ttattaagattagtgatattagaggaggtttgaaatggattataactggtctttcattatcaacacttcctaatactttgatccttggaattccactcat |
3217551 |
T |
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| Q |
416 |
gaaggctatgtataaagatgaatctgattttctactacctcagattattttcttgcaaagtatgatttggtataatttgcctttgcttct |
505 |
Q |
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| T |
3217550 |
gaaggctatgtataaagatgaatctgattttctactacctcagattattttcttgcaaagtatgatttggtataatttgcttttgtttct |
3217461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 50 - 495
Target Start/End: Complemental strand, 2036176 - 2035734
Alignment:
| Q |
50 |
catgatttccttaattgatgtctatcatgtagtaacagccactgtcccattatatgtaactatgttactagcatacatttgtgttaaatggtggaaactt |
149 |
Q |
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||||||||||||| |||| ||||||||| ||||| | |||||||||||||||||||| ||| ||||||| || | | || ||||||| || | |
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| T |
2036176 |
catgatttccttagccaatgtttatcatgtaataacaacaactgtcccattatatgtaacaatgatactagcctatgtctcagtgaaatggtttaagatc |
2036077 |
T |
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| Q |
150 |
ttcacaccagatcaatgtgcaggcataaacaaatttgtagcaaatttttcagttccattgttatcatttcaagtgatatcttcaaataacatttacaaaa |
249 |
Q |
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||||||| ||| |||||| |||| |||||||||||||| ||||| || ||| | || | |||||||||||||| || ||||| || || || ||||||| |
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| T |
2036076 |
ttcacacaagaacaatgttcaggaataaacaaatttgttgcaaaattctcaatccctcttttatcatttcaagtcatttcttccaacaatatctacaaaa |
2035977 |
T |
|
| Q |
250 |
tgagtcttaaacttatatatgcagattgtgttcaaaaatttcttgcatttttagtcttgattgttattattaagattagtgatattagaggaggtttgaa |
349 |
Q |
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|||| || ||||| || | | | |||| |||| ||| ||||||||||| | |||| | | |||||||||||||||| || ||| |||||||| |
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| T |
2035976 |
tgagcctaaaactaatgttttctgatttcattcagaaacttcttgcatttgttctcttaacagcaattattaagattagtggtaa---aggtggtttgaa |
2035880 |
T |
|
| Q |
350 |
atggattataactggtctttcattatcaacacttcctaatactttgatccttggaattccactcatgaaggctatgtataaagatgaatctgattttc-t |
448 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| | | || || |||||||| |||||| || ||| || | |
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| T |
2035879 |
atggattataactggtttttcattatcaacacttcctaatactttgattcttggaattccattgttaaaagcaatgtataaggatgaagct-attgtctt |
2035781 |
T |
|
| Q |
449 |
actacctcagattattttcttgcaaagtatgatttggtataatttgc |
495 |
Q |
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|| |||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
2035780 |
gttagctcagattgttttcttgcaaagtatgatttggtacaatttgc |
2035734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 34970770 - 34970841
Alignment:
| Q |
135 |
aaatggtggaaacttttcacaccagatcaatgtgcaggcataaacaaatttgtagcaaatttttcagttcca |
206 |
Q |
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|||||||||||| | |||||||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
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| T |
34970770 |
aaatggtggaaaatcttcacaccagatcaatgttcaggcataaaccgttttgtagcactttttgcagttcca |
34970841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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