View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16742_low_8 (Length: 449)
Name: NF16742_low_8
Description: NF16742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16742_low_8 |
 | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
| [»] scaffold0026 (2 HSPs) |
| | |
|
| [»] scaffold0013 (2 HSPs) |
| | |
|
| [»] scaffold0156 (1 HSPs) |
| | |
|
| [»] scaffold0193 (1 HSPs) |
| | |
|
| [»] scaffold0304 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0001 (2 HSPs) |
| | |
|
| [»] scaffold0241 (2 HSPs) |
| | |
|
| [»] scaffold0270 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 32 - 432
Target Start/End: Original strand, 23826965 - 23827365
Alignment:
| Q |
32 |
atttatctctgcctcatcttcaatggaattagttgggaaatcttttctaaaccaagccagtcctcgagtcctagttgtaaatggggcaatagaaggggtg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23826965 |
atttatctctgcctcatcttcaatggaattggttgggaaatcttttctaaaccaagccgaccctcgagtcctagttgtaaatggggcaatagaaggggtg |
23827064 |
T |
|
| Q |
132 |
aatacgtcacaacttagaagagtgttgtaggcaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatgg |
231 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23827065 |
aatacgtcacagcttagaagagtgttgtaggaaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatgg |
23827164 |
T |
|
| Q |
232 |
atctagcttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggct |
331 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23827165 |
atctagcttcatacgctttcgaaaggctgggaggaaggttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggcc |
23827264 |
T |
|
| Q |
332 |
atgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagatgagtttgcttagacaa |
431 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23827265 |
aggtatgatcagactaccgccaggttggaacgcttttacgctaatcacttcttgattcaagttctcatatagagatcctaagatgagtttgcttagacaa |
23827364 |
T |
|
| Q |
432 |
a |
432 |
Q |
| |
|
| |
|
|
| T |
23827365 |
a |
23827365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 23804463 - 23804406
Alignment:
| Q |
32 |
atttatctctgcctcatcttcaatggaattagttgggaaatcttttctaaaccaagcc |
89 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23804463 |
atttatctctgcctcatcttcgatggaattggttgggaaatcttttctaaaccaagcc |
23804406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 421
Target Start/End: Original strand, 22646967 - 22647107
Alignment:
| Q |
281 |
ttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcact |
380 |
Q |
| |
|
||||||| | |||||||| | ||||||| |||||||||||| ||||||| | | ||||| ||||||| ||||||||||| |||||| ||| ||| |
|
|
| T |
22646967 |
ttttgttctgaaagtggccagaagccacaattgaaacaaccagatagggccaggaatgatgagactactaccaggttggaaatcttttatgctggatact |
22647066 |
T |
|
| Q |
381 |
gcttgattcaagttctcatatagagatcctaagatgagttt |
421 |
Q |
| |
|
|| || ||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
22647067 |
gcatggttcaaactctcatataaagatcctaaaatgagttt |
22647107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 418
Target Start/End: Complemental strand, 23192261 - 23192134
Alignment:
| Q |
291 |
aaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattca |
390 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||| ||||||| | | ||||| ||||||| || |||||||| |||||| ||| ||||| || |||| |
|
|
| T |
23192261 |
aaagtggccaaaagccacaattgaaataaccagatagggccaggaatgatgagactactaccgggttggaaatcttttatgctggatactgcgtggttca |
23192162 |
T |
|
| Q |
391 |
agttctcatatagagatcctaagatgag |
418 |
Q |
| |
|
| ||||||||| ||||||||||||||| |
|
|
| T |
23192161 |
aactctcatataaagatcctaagatgag |
23192134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 418
Target Start/End: Complemental strand, 23613178 - 23613051
Alignment:
| Q |
291 |
aaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattca |
390 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||| ||||||| | | ||||| ||||||| || |||||||| |||||| ||| ||||| || |||| |
|
|
| T |
23613178 |
aaagtggccaaaagccacaattgaaataaccagatagggccaggaatgatgagactactaccgggttggaaatcttttatgctggatactgcgtggttca |
23613079 |
T |
|
| Q |
391 |
agttctcatatagagatcctaagatgag |
418 |
Q |
| |
|
| ||||||||| ||||||||||||||| |
|
|
| T |
23613078 |
aactctcatataaagatcctaagatgag |
23613051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 10829875 - 10829464
Alignment:
| Q |
20 |
ctcctatacaggatttatctctgcctcatcttcaatggaattagttgggaaatcttttctaaaccaagccagtcctcgagtcctagttgtaaatggggca |
119 |
Q |
| |
|
|||| |||||| | |||||||||||||||| || || ||||| ||||| |||| || ||||||||||||| |||||||| |||||||| |||| ||| |
|
|
| T |
10829875 |
ctcccatacagcaattatctctgcctcatcctcgattgaattggttggaaaattttctctaaaccaagccgaccctcgagttctagttgtgaatgaggcc |
10829776 |
T |
|
| Q |
120 |
atagaaggggtgaatacgtcacaacttagaagagtgttgtaggcaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaaccta |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||| | |
|
|
| T |
10829775 |
atagaaggggtgaaaacgtcacaacttagaagagcgttgtaggcattagagaataaatcctgagagattctattaccatactaaagcatggccaaacc-a |
10829677 |
T |
|
| Q |
220 |
ttccttcgatggatctagcttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaa |
319 |
Q |
| |
|
| |||||||||||||| ||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
10829676 |
tcccttcgatggatctgtgttcatacgctttcgaaaggctgggaggaaggttgatcgtcagttttgttttaaaagtggccaagagccatagttgaaacag |
10829577 |
T |
|
| Q |
320 |
ccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagatgagt |
419 |
Q |
| |
|
||||| ||||| | ||||| || || || |||||| ||||| |||||| |||| |||||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
10829576 |
ccaaacagggccgggaatgattaggcttccaccaggtgggaactcttttatgctagtcactgcttggttcaagttctcatatagggatcctaagataagt |
10829477 |
T |
|
| Q |
420 |
ttgcttagacaaa |
432 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10829476 |
ttgcttagacaaa |
10829464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 11023667 - 11023256
Alignment:
| Q |
20 |
ctcctatacaggatttatctctgcctcatcttcaatggaattagttgggaaatcttttctaaaccaagccagtcctcgagtcctagttgtaaatggggca |
119 |
Q |
| |
|
|||| |||||| | |||||||||||||||| || || ||||| ||||| |||| || ||||||||||||| |||||||| |||||||| |||| ||| |
|
|
| T |
11023667 |
ctcccatacagcaattatctctgcctcatcctcgattgaattggttggaaaattttctctaaaccaagccgaccctcgagttctagttgtgaatgaggcc |
11023568 |
T |
|
| Q |
120 |
atagaaggggtgaatacgtcacaacttagaagagtgttgtaggcaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaaccta |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||||| | ||||||||||||||| | |
|
|
| T |
11023567 |
atagaaggggtgaaaacgtcacaacttagaagagcgttgtaggcattagagaataaatcctgagagattctattaccatactaaagcatggccaaacc-a |
11023469 |
T |
|
| Q |
220 |
ttccttcgatggatctagcttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaa |
319 |
Q |
| |
|
| |||||||||||||| ||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
11023468 |
tcccttcgatggatctgtgttcatacgctttcgaaaggctgggaggaaggttgatcgtcagttttgttttaaaagtggccaagagccatagttgaaacag |
11023369 |
T |
|
| Q |
320 |
ccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagatgagt |
419 |
Q |
| |
|
||||| ||||| | ||||| || || || |||||| ||||| |||||| |||| |||||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
11023368 |
ccaaacagggccgggaatgattaggcttccaccaggtgggaactcttttatgctagtcactgcttggttcaagttctcatatagggatcctaagataagt |
11023269 |
T |
|
| Q |
420 |
ttgcttagacaaa |
432 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11023268 |
ttgcttagacaaa |
11023256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 32 - 423
Target Start/End: Complemental strand, 13348449 - 13348058
Alignment:
| Q |
32 |
atttatctctgcctcatcttcaatggaattagttgggaaatcttttctaaaccaagccagtcctcgagtcctagttgtaaatggggcaatagaaggggtg |
131 |
Q |
| |
|
||||||||||||||||||||| || | || ||||| || ||||||||||||||||| | || |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
13348449 |
atttatctctgcctcatcttcgataaagtttgttggaaattcttttctaaaccaagctggctctggagtcctagttgtaaatgaggccatagaaggggtg |
13348350 |
T |
|
| Q |
132 |
aatacgtcacaacttagaagagtgttgtaggcaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatgg |
231 |
Q |
| |
|
|| || |||||||||||||||| ||| |||||||||||||||||||| || || | ||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13348349 |
aacacatcacaacttagaagagcgttttaggcaatagagaataaatcctgcgatctcctactaccatattgaagcatggccaaacctatcccttcgatgg |
13348250 |
T |
|
| Q |
232 |
atctagcttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggct |
331 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||| ||||| |||||||| || |||| ||||| | |||||||| |||||||||||||||||| | |
|
|
| T |
13348249 |
atctagcttcatatgtttttgaaagattgggaggaagattgattgccagtttcgtcctaaacgtggccaggagccacaattgaaacaaccaaataggacc |
13348150 |
T |
|
| Q |
332 |
atgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagatgagtttgc |
423 |
Q |
| |
|
| ||||||| ||||||| |||| ||||||| |||||| || | |||| ||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
13348149 |
aggtatgattagactacaaccagattggaactcttttatgccacccacttcttgatttaagttctcatatagagattctaagatgagtttgc |
13348058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 418
Target Start/End: Complemental strand, 18161168 - 18161031
Alignment:
| Q |
281 |
ttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcact |
380 |
Q |
| |
|
||||||| ||||||||| || ||||||| |||||||||||| ||| ||| | | ||||| ||||||| ||||||||||| |||||| || ||| |
|
|
| T |
18161168 |
ttttgttctaaaagtggtcaaaagccacaattgaaacaaccagataaggccaggaatgatgagactactaccaggttggaaatcttttattctggatact |
18161069 |
T |
|
| Q |
381 |
gcttgattcaagttctcatatagagatcctaagatgag |
418 |
Q |
| |
|
|| || ||||| ||||||||| ||||| ||||||||| |
|
|
| T |
18161068 |
gcatggttcaaactctcatataaagatcataagatgag |
18161031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 39 - 421
Target Start/End: Original strand, 7451 - 7833
Alignment:
| Q |
39 |
tctgcctcatcttcaatggaattagttgggaaatcttttctaaaccaagccagtcctcgagtcctagttgtaaatggggcaatagaaggggtgaatacgt |
138 |
Q |
| |
|
|||||||||||||| | |||| |||||| |||||| ||||||||||||| | || ||||| ||||||||||||||||| || ||||||||||| | | |
|
|
| T |
7451 |
tctgcctcatcttcgactgaatcagttggaaaatctgctctaaaccaagccggcccacgagttctagttgtaaatggggccattgaaggggtgaacatga |
7550 |
T |
|
| Q |
139 |
cacaacttagaagagtgttgtaggcaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatggatctagc |
238 |
Q |
| |
|
| ||||| | ||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7551 |
cgcaactaaaaagagcattgtaggcaatgatgaataggtcttgagaacttctattaccatattgaagcatggccaaacctattccttcgatggatctatc |
7650 |
T |
|
| Q |
239 |
ttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatg |
338 |
Q |
| |
|
|||||| ||||| |||||||||| ||||| ||||| |||||||||||||| || ||||| || ||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
7651 |
ctcatacgctttcgaaaggctggggggaaggttgattgccagttttgttttgaaggtggccaaaagccacagttggaacaaccaaatagggccaggtatg |
7750 |
T |
|
| Q |
339 |
atcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagatgagttt |
421 |
Q |
| |
|
|| || |||||||||| |||||| |||||| ||| |||||||||||||||||| ||| | ||||||||||| || ||||| |
|
|
| T |
7751 |
attaggctaccgccagattggaaatcttttatgcttgccactgcttgattcaagttttcacacagagatcctaaaataagttt |
7833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 159 - 424
Target Start/End: Complemental strand, 134366 - 134102
Alignment:
| Q |
159 |
taggcaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatggatctagcttcatacactttcaaaaggc |
258 |
Q |
| |
|
|||||||| ||||||| ||||| || | |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
134366 |
taggcaatgaagaataagtcttgcgaactcctattaccatattggagcatggtcaaacctatcccttcgatggatctagcttcatatgctttcgaaaggt |
134267 |
T |
|
| Q |
259 |
tgggaggaagtttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttg |
358 |
Q |
| |
|
||| |||||| |||||||||||||| ||| |||||||||| |||||||| | ||||| |||||||||||| | | ||||||| ||||||| |||||||| |
|
|
| T |
134266 |
tgg-aggaagattgatcgccagtttcgttctaaaagtggccaagagccataattgaagcaaccaaataggaccaggtatgattagactacaaccaggttg |
134168 |
T |
|
| Q |
359 |
gaacgcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagatgagtttgct |
424 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
134167 |
gaactcttttatgctagccactgcttgattcaagttctcatatagggatcctaagatgagtttgct |
134102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 330
Target Start/End: Complemental strand, 12023347 - 12023212
Alignment:
| Q |
195 |
ccatattgaagcatggccaaacctattccttcgatggatctagcttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaaag |
294 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||| | ||||| |||| |||| || || || || | || |||| | ||||||| |||| |
|
|
| T |
12023347 |
ccatactgaagcatggacaaacctattccttcgatggatctaccctcataagcttttgaaagacttgggggcagatggactgccaatcttgttttgaaag |
12023248 |
T |
|
| Q |
295 |
tggctaagagccacagttgaaacaaccaaatagggc |
330 |
Q |
| |
|
|||| || ||||| | ||| ||||||||||| |||| |
|
|
| T |
12023247 |
tggccaaaagccataattggaacaaccaaatggggc |
12023212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 12846483 - 12846444
Alignment:
| Q |
195 |
ccatattgaagcatggccaaacctattccttcgatggatc |
234 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
12846483 |
ccatactgaagcatggccaaacctattccttcgacggatc |
12846444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 14684969 - 14684922
Alignment:
| Q |
189 |
ctattaccatattgaagcatggccaaacctattccttcgatggatcta |
236 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14684969 |
ctatttccatattgaagcatggccagacctaaaccttcgatggatcta |
14684922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 63 - 415
Target Start/End: Complemental strand, 15666731 - 15666380
Alignment:
| Q |
63 |
gttgggaaatcttttctaaaccaagccagtcctcgagtcctagttgtaaatggggcaatagaaggggtgaatacgtcacaacttagaagagtgttgtagg |
162 |
Q |
| |
|
||||| |||||| |||||||||||| || || ||||||||||| || |||||||| || ||||||||||| | ||||||| | ||||| ||||||| |
|
|
| T |
15666731 |
gttggaaaatctgctctaaaccaagctagcccacgagtcctagtggtgaatggggccattgaaggggtgaacgtgacacaactcaaaagagcattgtagg |
15666632 |
T |
|
| Q |
163 |
caatagagaataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatggatctagcttcatacactttcaaaaggctggg |
262 |
Q |
| |
|
|||| | ||||| |||||| | | ||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||| ||||| ||||||| || |
|
|
| T |
15666631 |
caatggtgaataggtcttgacaactcctattaccatattgaagcatggccagacctatttcttcgatggatctatcctcatatgctttcgaaaggcttgg |
15666532 |
T |
|
| Q |
263 |
aggaagtttgatcgccagttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaac |
362 |
Q |
| |
|
|| || ||||| |||| ||| ||||| || ||||| || ||||| ||||||||||||| || |||| | |||| || || ||||| ||||||||||| |
|
|
| T |
15666531 |
ggggaggttgattgccaatttggttttgaaggtggccaaaagccatagttgaaacaacc-aacggggccaggtataattaggctaccaccaggttggaaa |
15666433 |
T |
|
| Q |
363 |
gcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagat |
415 |
Q |
| |
|
|||| | |||| ||| || ||||||||||| ||||| | ||| |||||||| |
|
|
| T |
15666432 |
tctttgatgctagccaccgcctgattcaagttttcatacaaagaccctaagat |
15666380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 400
Target Start/End: Complemental strand, 26462601 - 26462294
Alignment:
| Q |
93 |
cctcgagtcctagttgtaaatggggcaatagaaggggtgaatacgtcacaacttagaagagtgttgtaggcaatagagaataaatcttgagaggttctat |
192 |
Q |
| |
|
|||||| |||| |||||||||||||| |||| |||||| || || ||||| ||||| |||| |||||| ||||| |||| ||| ||||| ||| | |||| |
|
|
| T |
26462601 |
cctcgaatcctggttgtaaatggggccataggaggggtaaaaacatcacaccttaggagagcgttgtaagcaatggagagtaactcttgcgagttcctat |
26462502 |
T |
|
| Q |
193 |
taccatattgaagcatggccaaacctattccttcgatggatctagcttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaa |
292 |
Q |
| |
|
| |||||||||||||||| || |||||||||||| ||||||| |||| || | |||||||| ||| || || ||| ||||| |||||| |||| |
|
|
| T |
26462501 |
tgccatattgaagcatggaaaatcctattccttcggtggatctctcttcgtatgccttcaaaagattggtggggaggctgaatgccagctttgttctaaa |
26462402 |
T |
|
| Q |
293 |
agtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaag |
392 |
Q |
| |
|
|||||| || | ||||||||| || | ||||||||| | | | || ||||| |||| || | |||||| |||| | |||| ||||||||||||| || |
|
|
| T |
26462401 |
agtggccaaaacccacagttggaaaagccaaataggaccaggaataatcaggctacttcctgattggaattctttaatgctactcactgcttgatttaaa |
26462302 |
T |
|
| Q |
393 |
ttctcata |
400 |
Q |
| |
|
|||||||| |
|
|
| T |
26462301 |
ttctcata |
26462294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 418
Target Start/End: Original strand, 23494975 - 23495102
Alignment:
| Q |
291 |
aaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattca |
390 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||| ||||||| | | ||||| ||||||| ||||||||||| |||||| ||| |||||| || |||| |
|
|
| T |
23494975 |
aaagtggccaaaagccacaattgaaacagccagatagggccaggaatgatgagactactaccaggttggaaatcttttatgctggacactgcatggttca |
23495074 |
T |
|
| Q |
391 |
agttctcatatagagatcctaagatgag |
418 |
Q |
| |
|
| ||||||||| ||||||||| ||||| |
|
|
| T |
23495075 |
aactctcatataaagatcctaaaatgag |
23495102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 19027212 - 19027147
Alignment:
| Q |
171 |
aataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatggatcta |
236 |
Q |
| |
|
||||||||| |||| | |||||||||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
19027212 |
aataaatctggagaactcctattaccatattggagcatggccaaacctaaaccttcgatcgatcta |
19027147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 291 - 421
Target Start/End: Complemental strand, 120002 - 119872
Alignment:
| Q |
291 |
aaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattca |
390 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| | |||| || || || | ||||||||||| |||||| |||| ||||||||| |||| |
|
|
| T |
120002 |
aaagtggctaagagccataattgaaacaaccaaatagggccaggtataataaggctgctaccaggttggaaatcttttatgctagacactgcttggttca |
119903 |
T |
|
| Q |
391 |
agttctcatatagagatcctaagatgagttt |
421 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |
|
|
| T |
119902 |
gattctcatatagagaccctaagataagttt |
119872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 120122 - 120057
Alignment:
| Q |
171 |
aataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatggatcta |
236 |
Q |
| |
|
||||||||| ||||| | || || |||||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
120122 |
aataaatctggagagctcctgttgccatattggagcatggccaaacctaaaccttcgatgggtcta |
120057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 415
Target Start/End: Original strand, 126008 - 126220
Alignment:
| Q |
203 |
aagcatggccaaacctattccttcgatggatctagcttcatacactttcaaaaggctgggaggaagtttgatcgccagttttgttttaaaagtggctaag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | | ||| |||| ||||||| || ||||| |||| || | || ||| | |||||||| || |
|
|
| T |
126008 |
aagcatggccaaacctattccttcgatggatcaatccacgtacgcttttgaaaggctcgggggaaggttgactgctaacttagttctgaaagtggccaaa |
126107 |
T |
|
| Q |
303 |
agccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaagttctcatata |
402 |
Q |
| |
|
||||| | ||| |||||||||| ||||| | |||| ||||| |||| |||||||| || |||| |||||| |||||| ||||||| ||||| |||| |
|
|
| T |
126108 |
agccataattggaacaaccaaacagggccaggtataatcaggctactaccaggttgaaagtctttgacgctagccactgcctgattcagattctcgtata |
126207 |
T |
|
| Q |
403 |
gagatcctaagat |
415 |
Q |
| |
|
|||||||||||| |
|
|
| T |
126208 |
aagatcctaagat |
126220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 118061 - 118195
Alignment:
| Q |
100 |
tcctagttgtaaatggggcaatagaaggggtgaatacgtcacaacttagaagagtgttgtaggcaatagagaataaatcttgagaggttctattaccata |
199 |
Q |
| |
|
||||||| ||||| ||||| || |||||| ||||| | ||||||| | |||| ||||| ||||| | |||||| ||||| || | || || ||||| |
|
|
| T |
118061 |
tcctagtggtaaaaggggccatcgaagggatgaatgagacacaactcaagagagcattgtaagcaatggcgaataagtcttgtgaactcctgttgccata |
118160 |
T |
|
| Q |
200 |
ttgaagcatggccaaacctattccttcgatggatc |
234 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |
|
|
| T |
118161 |
ctaaagcatggccaaacctattccttcgatggatc |
118195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 418
Target Start/End: Original strand, 21528723 - 21528859
Alignment:
| Q |
282 |
tttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactg |
381 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| || ||||| |||| | |||| || || || | |||||||| || |||||| ||| ||||| |
|
|
| T |
21528723 |
tttgttctgaaagtggctaagagccacagttgaaataaacaaatggggccaggtataataaggctgctaccaggttgaaagtcttttatactagacactg |
21528822 |
T |
|
| Q |
382 |
cttgattcaagttctcatatagagatcctaagatgag |
418 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||| |
|
|
| T |
21528823 |
cttggttcagactctcatataaagatcctaagatgag |
21528859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0156 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 421
Target Start/End: Complemental strand, 19976 - 19889
Alignment:
| Q |
334 |
gtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattcaagttctcatatagagatcctaagatgagttt |
421 |
Q |
| |
|
||||||| | ||||| |||| ||||||| |||||| |||| |||||||||||| ||||| ||||||||||||| || ||||||||| |
|
|
| T |
19976 |
gtatgattaaactacatccagattggaactcttttatgctagccactgcttgatttaagttttcatatagagatcgtaggatgagttt |
19889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 28570 - 28512
Alignment:
| Q |
171 |
aataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgat |
229 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
28570 |
aataaatctggagagcttctgttaccatattggagcatggccaaacctaaaccttcgat |
28512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 418
Target Start/End: Complemental strand, 7499 - 7362
Alignment:
| Q |
281 |
ttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcact |
380 |
Q |
| |
|
||||||| | |||||||| || ||||||| |||||||||||| ||||||| | | ||||| || |||| ||||||||||| | |||| ||| ||| |
|
|
| T |
7499 |
ttttgttctgaaagtggccaaaagccacaattgaaacaaccagatagggccaggaatgataaggctactaccaggttggaaatcgtttatgctggatact |
7400 |
T |
|
| Q |
381 |
gcttgattcaagttctcatatagagatcctaagatgag |
418 |
Q |
| |
|
|| || ||||| ||||||||| ||||||||||||||| |
|
|
| T |
7399 |
gcatggttcaaactctcatataaagatcctaagatgag |
7362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 27444 - 27524
Alignment:
| Q |
156 |
ttgtaggcaatagagaataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatggatcta |
236 |
Q |
| |
|
||||| ||||||| || |||||| ||||| | || || |||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
27444 |
ttgtaagcaatagcaaacaaatctagagagctcctgttgccatattggagcatggccaaacctagaccttcgatggatcta |
27524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 117163 - 117115
Alignment:
| Q |
171 |
aataaatcttgagaggttctattaccatattgaagcatggccaaaccta |
219 |
Q |
| |
|
||||||||| ||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
117163 |
aataaatctggagagctcctattaccatattggagcatggccaaaccta |
117115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 117052 - 117012
Alignment:
| Q |
282 |
tttgttttaaaagtggctaagagccacagttgaaacaacca |
322 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
117052 |
tttgttctgaaagtggctaagagccacagttgaaataacca |
117012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 21309025 - 21309069
Alignment:
| Q |
192 |
ttaccatattgaagcatggccaaacctattccttcgatggatcta |
236 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
21309025 |
ttaccatactgaagcatggccaaacctaatccttcgattgatcta |
21309069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 22796308 - 22796243
Alignment:
| Q |
171 |
aataaatcttgagaggttctattaccatattgaagcatggccaaacctattccttcgatggatcta |
236 |
Q |
| |
|
||||||||| ||||| | || || |||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
22796308 |
aataaatctggagagctcctgttgccatattggagcatggccaaacctaaaccttcgattgatcta |
22796243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 426
Target Start/End: Original strand, 23513 - 23648
Alignment:
| Q |
291 |
aaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactgcttgattca |
390 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| || |||| | |||| || || || | |||| ||| || |||||| |||| ||||||||| |||| |
|
|
| T |
23513 |
aaagtggctaagagccataattgaaataaccagatggggccaggtataataaggctgctaccagtttgaaaatcttttatgctagacactgcttggttca |
23612 |
T |
|
| Q |
391 |
agttctcatatagagatcctaagatgagtttgctta |
426 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||| |
|
|
| T |
23613 |
gattctcatataaagatcctaggatgagtttactta |
23648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 23393 - 23441
Alignment:
| Q |
171 |
aataaatcttgagaggttctattaccatattgaagcatggccaaaccta |
219 |
Q |
| |
|
||||||||| ||||| | || ||||||||||| |||||||||||||||| |
|
|
| T |
23393 |
aataaatctggagagctcctgttaccatattggagcatggccaaaccta |
23441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 1733832 - 1733865
Alignment:
| Q |
394 |
tctcatatagagatcctaagatgagtttgcttag |
427 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
1733832 |
tctcatatagagatcctaagatgagtttacttag |
1733865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 418
Target Start/End: Complemental strand, 22335122 - 22334986
Alignment:
| Q |
282 |
tttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaacgcttttacgctaatcactg |
381 |
Q |
| |
|
|||||| | ||||||||||||||||| | |||||| ||||| || |||| | |||| || || || | |||||||| || |||||| |||| |||| |
|
|
| T |
22335122 |
tttgttctgaaagtggctaagagccataattgaaataaccagatggggccaggtataataaggctgctaccaggttgaaaatcttttatgctagatactg |
22335023 |
T |
|
| Q |
382 |
cttgattcaagttctcatatagagatcctaagatgag |
418 |
Q |
| |
|
|||| |||| |||||||||| |||||||| |||||| |
|
|
| T |
22335022 |
cttggttcagattctcatataaagatcctaggatgag |
22334986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0270 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0270
Description:
Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 23064 - 22984
Alignment:
| Q |
281 |
ttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaa |
361 |
Q |
| |
|
||||||| | |||||||| || ||||||| |||||||||||| ||||||| | | ||||| || |||| ||||||||||| |
|
|
| T |
23064 |
ttttgttctgaaagtggccaaaagccacaattgaaacaaccagatagggccaggaatgataaggctactaccaggttggaa |
22984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 14558604 - 14558524
Alignment:
| Q |
281 |
ttttgttttaaaagtggctaagagccacagttgaaacaaccaaatagggctatgtatgatcagactaccgccaggttggaa |
361 |
Q |
| |
|
||||||| | |||||||| || ||||||| |||||||||||| ||||||| | | ||||| || |||| ||||||||||| |
|
|
| T |
14558604 |
ttttgttctgaaagtggccaaaagccacaattgaaacaaccagatagggccaggaatgataaggctactaccaggttggaa |
14558524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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