View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_high_15 (Length: 279)
Name: NF16743_high_15
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_high_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 37941658 - 37941392
Alignment:
| Q |
13 |
aatatatacaacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagccactgcaaaagtaccctcttggttatt |
112 |
Q |
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| T |
37941658 |
aatatatacaacatgcacagccaaaaccaagctttcacctttcgaacaattcatgatcaaacaccacaaaagccactgcaaaagtaccctcttggttatt |
37941559 |
T |
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| Q |
113 |
cttctgctcttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatgggtaatgtcttggaggaattaggaat |
212 |
Q |
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| T |
37941558 |
cttcagctcttgtctcaaaaacacaagtaccatctttggaaattccgccaagtactgattctcatctcaaaatgggtaatgtcttggaggaattaggaat |
37941459 |
T |
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| Q |
213 |
attgaggcatgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaaga |
279 |
Q |
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| T |
37941458 |
attgaggcatgatgatcgtgttaacttgatgagtagtaacaatggttcaaaagaatgggcccgaaga |
37941392 |
T |
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