View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_high_19 (Length: 227)
Name: NF16743_high_19
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 11137579 - 11137404
Alignment:
| Q |
28 |
gttccacaatcatagttaatttgatttcgtaatgaaatgatgagtatagcctcacgaattcaatctttattctcaacttatcaactataaactacttcga |
127 |
Q |
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| T |
11137579 |
gttccacaatcatagttaatttgatttcgtaatgaaatgatgagtatagcctcacgaattcaatctttattctcaacttatcaactataaactacttcga |
11137480 |
T |
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| Q |
128 |
tatttattagattctctaaatttgaagttcctgaatttcccaacattttagtcaaa-aaacagtttcccaacattt |
202 |
Q |
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| T |
11137479 |
tatttattagattctctaaatttgaagttcctgaatttcccaacattttagtcaaagaaaaagtttcccaacattt |
11137404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 11137416 - 11137358
Alignment:
| Q |
163 |
tttcccaacatttt-agtcaaaaaacagtttcccaacatttactctaatcatgaaaaaga |
221 |
Q |
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| T |
11137416 |
tttcccaacattttgagtcaaaaaacagtttcccaacatttactc-aatcatgaaaaaga |
11137358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 23257550 - 23257635
Alignment:
| Q |
134 |
ttagattctctaaatttgaagttcctgaatttcccaacatttt-agtcaaaaaacagtttcccaacatttactctaatcatgaaaaaga |
221 |
Q |
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| T |
23257550 |
ttagattctctaaatttgaagttcctaaatttcccaacattttgagtc---aaagagtttcccagcatttaggctaatcttgaaaaaga |
23257635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 23275428 - 23275513
Alignment:
| Q |
134 |
ttagattctctaaatttgaagttcctgaatttcccaacatttt-agtcaaaaaacagtttcccaacatttactctaatcatgaaaaaga |
221 |
Q |
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| T |
23275428 |
ttagattctctaaatttgaagttcctaaatttcccaacattttgagtc---aaagagtttcccagcatttaggctaatcttgaaaaaga |
23275513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 23268042 - 23268088
Alignment:
| Q |
177 |
agtcaaaaaacagtttcccaacatttactctaatcatgaaaaagatg |
223 |
Q |
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| T |
23268042 |
agtcaaaaaagagtttcccaacatttaggttaatcatgaaaaagatg |
23268088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 23267949 - 23268008
Alignment:
| Q |
115 |
taaactacttcgatatt--tattagattctctaaatttgaagttcctgaatttcccaacat |
173 |
Q |
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| T |
23267949 |
taaactacttcaatattatttttagattctttaa-tttgaagttcctgaatttcccaacat |
23268008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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