View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_high_9 (Length: 343)
Name: NF16743_high_9
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 3951662 - 3951472
Alignment:
| Q |
10 |
attatactataaatgggtgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcga |
109 |
Q |
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| T |
3951662 |
attatactataaatgggtgagtagcagaatgtatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatg-ttcttgcga |
3951564 |
T |
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| Q |
110 |
aaattccatctggcaatgccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa |
201 |
Q |
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| T |
3951563 |
aaattccatccggcaatgccttacttccataatgcctgtattgcttctgaggaaataaaaatcaacagaagcagaatcagaggcaactctaa |
3951472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 200 - 343
Target Start/End: Complemental strand, 3951440 - 3951299
Alignment:
| Q |
200 |
aaatccctccgagttacacgtgtgacgaagttttcaagtcccaattcttgactttaaagaccaaaatgacagtttactctaatttctgcagagtaaatgt |
299 |
Q |
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| T |
3951440 |
aaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaaggaacaaaatga--gtttactctaatttctgcagagtaaattt |
3951343 |
T |
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| Q |
300 |
ttagtattattatacaatgatttctgcataaaagtgtgcaggac |
343 |
Q |
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| T |
3951342 |
ttagtattattatacaacggtttctgcataaaagtgtgcaggac |
3951299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 4027219 - 4027404
Alignment:
| Q |
15 |
actataaatgggtgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaatt |
114 |
Q |
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| T |
4027219 |
actatagatggatgagtagcagaacatacttcacatacatgatttgtacaagagtaccaaaatggacgcatttcgaagttagat-tttctagcaacaatt |
4027317 |
T |
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| Q |
115 |
ccatctggcaatgccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa |
201 |
Q |
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|||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
4027318 |
ccatatggcaatgccttacttccagaatgtatgtattgtctctgaggaaatgcaaattaacagaagcagaatcagaggcaattctaa |
4027404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 4012917 - 4013105
Alignment:
| Q |
12 |
tatactataaatgggtgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaa |
111 |
Q |
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| T |
4012917 |
tatactataaatggatgagtagccgcacatatttcacatacatgaataatactagagtcccataatcgccgcatttctaagttagctgtc-ctagcaaca |
4013015 |
T |
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| Q |
112 |
attccatctggcaatgccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa |
201 |
Q |
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| T |
4013016 |
attccatattgcaatgccttacttccggaatgcctgtattgtctctgacgaaatgaaaattaacagaagcagaatcagaggcaattctaa |
4013105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 3990103 - 3990274
Alignment:
| Q |
29 |
agtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaattccatctggcaatgc |
128 |
Q |
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|||||||| |||| |||||||||||||| |||| || |||||||||||||||||||||| | |||||| ||||| || | ||||||| |||| ||||| |
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| T |
3990103 |
agtagcagcacatttctcacatacatgatttatgccagagtcccataatggccgcatttcaaatttagat-tttctagcaacaattccagctggaaatgc |
3990201 |
T |
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| Q |
129 |
cttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcagaggaaattctaa |
201 |
Q |
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| T |
3990202 |
cttacttccagaatccctgtattgtgtctgaggaaatgcaaatcaatagaaacagaatcagatgcaattctaa |
3990274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 4004504 - 4004679
Alignment:
| Q |
13 |
atactataaatgggtgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttcttgcgaaaa |
112 |
Q |
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| T |
4004504 |
atactatatatggatgagtaccagcacatatttcacatacatgatttgtaccagaggctcggaatggccgtgtttccgaattatatgtt-ctagcaatca |
4004602 |
T |
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| Q |
113 |
ttccatctggcaatgccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagcagaatcag |
189 |
Q |
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| T |
4004603 |
ttccatcttgcaatgccttacttccggaatgcctgtattgtctctgaggaaatgcaaataagcagaagcagaatcag |
4004679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 4027464 - 4027574
Alignment:
| Q |
230 |
ttttcaagtcccaattcttgactttaaagaccaaaatgacagtttactctaatttctgcagagtaaatgtttagtattattatacaatgatttctgcata |
329 |
Q |
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|||||||||||||||||||||| |||| ||||||||||| ||||| ||||||| |||||| | | ||| |||||| |||||||||||||||||| ||| |
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| T |
4027464 |
ttttcaagtcccaattcttgacattaaggaccaaaatgatagtttgctctaatatctgca-aattaatatttagttctattatacaatgatttctacat- |
4027561 |
T |
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| Q |
330 |
aaagtgtgcaggac |
343 |
Q |
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| T |
4027562 |
-aagtgtgcaggac |
4027574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 3990538 - 3990597
Alignment:
| Q |
281 |
atttctgcagagtaaatgtttagtattattatacaatgattt-ctgcataaaagtgtgca |
339 |
Q |
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| T |
3990538 |
atttctgcaaagtaaagctttagaactattatacaatgatttcctgcataaaagtgtgca |
3990597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 13400073 - 13400245
Alignment:
| Q |
11 |
ttatactataaatgggtgagtagcagaacatatctcacatacatgacttataccgaagtcccataatggccgcatttccgagttagatgtttct---tgc |
107 |
Q |
| |
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||||||||||| || |||||||||| |||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||| || |
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| T |
13400073 |
ttatactataactgattgagtagcagcacatatttcacatacattatttataccaaagtcccataatggccgcatttccgagttagatg-ttctagcagc |
13400171 |
T |
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| Q |
108 |
gaaaattccatctggcaatgccttacttccataatgcctgtattgtctctgaggaaatggaaatcaacagaagc |
181 |
Q |
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| T |
13400172 |
aacaattccatatggcaatgccttattttcagaatgcctgtattgtctctgaggaaatgtaaattaacagaagc |
13400245 |
T |
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