View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_11 (Length: 320)
Name: NF16743_low_11
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 24242756 - 24242953
Alignment:
| Q |
18 |
gaatttgagatcaacattatttagctcgacaccatcacatggcacggcactgctgcaaataagaacaactccttctgcagttcctgaggttcccttaacg |
117 |
Q |
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| T |
24242756 |
gaatttgagatcaacattatttagctcgacaccatcacatggtacggcactgctgcaaataagaacaactccttctgcagttcctgaggttcccttaacg |
24242855 |
T |
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| Q |
118 |
ttcttgaatgaaatcttgcttaactttatttttgatggattctaaaccattgaaaaccatgcaagaaatgaacaaaagttagtcatttgaattatagt |
215 |
Q |
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| T |
24242856 |
ttcttgaatgtaatcttgcttaactttatttttgatggattctaaaccattgaataccatgcaagaaatgaacaaaagttagtcatttgaattatagt |
24242953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 24299442 - 24299245
Alignment:
| Q |
18 |
gaatttgagatcaacattatttagctcgacaccatcacatggcacggcactgctgcaaataagaacaactccttctgcagttcctgaggttcccttaacg |
117 |
Q |
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| T |
24299442 |
gaatttgagatcaacattatttagctcgacaccatcacatggtacggcactgctgcaaataagaacaactccttctgcagttcctgaggttcccttaacg |
24299343 |
T |
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| Q |
118 |
ttcttgaatgaaatcttgcttaactttatttttgatggattctaaaccattgaaaaccatgcaagaaatgaacaaaagttagtcatttgaattatagt |
215 |
Q |
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| T |
24299342 |
ttcttgaatgtaatcttgcttaactttatttttgatggattctaaaccattgaataccatgcaagaaatgaacaaaagttagtcatttgaattatagt |
24299245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 24231111 - 24231309
Alignment:
| Q |
18 |
gaatttgagatcaacattatttagctcgacaccatcacatggcacggcactgctgcaaataagaacaactccttctgcagttcctgaggttcccttaacg |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| || |||||||||||||| || | |
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| T |
24231111 |
gaatttgacatcaacattatttagctcgacaccatcacatggtacggcactgctgcaaacaagaaccactccttctggagctcctgaggttccctgaatg |
24231210 |
T |
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| Q |
118 |
ttcttgaatgaaatcttgcttaactttatttttgatggattctaaaccattgaaaaccatgcaagaaatgaacaaaagttagtcatttgaattatagttt |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||| |
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| T |
24231211 |
ttcttgaatgaaatcttgcttaactttacttttgatggaacctaaaccattgaaaaccatgcaag-aatgaacaaaagttagtaacttaaattatagttt |
24231309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 238 - 320
Target Start/End: Original strand, 24242956 - 24243038
Alignment:
| Q |
238 |
cttttcatcttagagaatagattttgtaatcatttaattgaaatgtaaataattaggaagattatagatttgcattgtgaaat |
320 |
Q |
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| T |
24242956 |
cttttcatcatagagaatagattttgtaatcatttaattgaaatgtagataagtaggaagattatagatttgcattgtgaaat |
24243038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 24299242 - 24299160
Alignment:
| Q |
238 |
cttttcatcttagagaatagattttgtaatcatttaattgaaatgtaaataattaggaagattatagatttgcattgtgaaat |
320 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
24299242 |
cttttcatcatagagaatagattttgtaatcatttaattgaaatgtagataagtaggaagattatagatttgcattgtgaaat |
24299160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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