View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_15 (Length: 285)
Name: NF16743_low_15
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 3151277 - 3151534
Alignment:
| Q |
18 |
tgttaatggtatgataccaaatttatatgcttgtcgatttgtgcagttggtaagatgggccttttttnnnnnnnnngaaataacagtgaaatattgagac |
117 |
Q |
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| T |
3151277 |
tgttaatggtaagataccaaatttatatgcttgtcgatttgtgcagttggtaagatgagccttttttaaaaaaaa-gaaataacagtgtaatattgagac |
3151375 |
T |
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| Q |
118 |
agttggtaacatcacatgagtctttttcaggaaaaaataaaattggagtca-cccatgcagccaaaccctgtgtcatgtgtgcagaaaatttagtgtcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3151376 |
agttggtaacatcacatgagtctttttcaggaaaaaataaaattggagtcatccaatgcagccaaatcctgtgtcatgtgtgcagaaaatttagtgtcaa |
3151475 |
T |
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| Q |
217 |
attttaggttttttgnnnnnnnngaatgtggatatagttcagcttaacttagacctttg |
275 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3151476 |
attttaggttttttgaaagaaaagaatgtggatatagttcagcttaacttagacctttg |
3151534 |
T |
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