View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_17 (Length: 274)
Name: NF16743_low_17
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 32425658 - 32425390
Alignment:
| Q |
9 |
tggagtagcataggcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcata----------------------aagggctcacc |
86 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32425658 |
tggagtagcgtaagcgttgaaggtgagcattgttcctaacccacacctcatgatacttaggatcatatggaactgcttgcccatttataaagggctcac- |
32425560 |
T |
|
| Q |
87 |
tagtgagagggaatcaaagaagtccaccaagcatcatgttatgtaccttctacaacaagaaatattatatgctatggaaagaattcacatcatgttattc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425559 |
tagtgagagggaatcaaagaagtccaccaagcatcatgttatgtaccttctacaacaagaaatattatatgctatggaaagaattcacatcatgttattc |
32425460 |
T |
|
| Q |
187 |
tcaggacagcgttgaagttattcacaccacttacactgagtgattataattagaagctaggtgatggtac |
256 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
32425459 |
tcagtacagcgttgaagttattcacaccacttacactgactgattgtaattagaagctaggtgatggtac |
32425390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 32421347 - 32421305
Alignment:
| Q |
33 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
75 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
32421347 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
32421305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 1543610 - 1543507
Alignment:
| Q |
73 |
ataaagggctcacctagtgagagggaatcaaagaagtccaccaagcatcatgttatgtaccttctacaacaagaaatattatatgctatggaaagaattc |
172 |
Q |
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||||||||||| ||| | ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
1543610 |
ataaagggctcccctggcgagagggaaacaaacaagtccaccaagcatcatgttatgtaccttttacaacaagaaatattatatgctatggaaagacttc |
1543511 |
T |
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| Q |
173 |
acat |
176 |
Q |
| |
|
|||| |
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|
| T |
1543510 |
acat |
1543507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 1543672 - 1543630
Alignment:
| Q |
33 |
gagcattgttcctaacccacacctcatgatacttaggatcata |
75 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
1543672 |
gagcattgttcctaacccactcctcatgatacttgggatcata |
1543630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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