View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_18 (Length: 264)
Name: NF16743_low_18
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 10601875 - 10601643
Alignment:
| Q |
17 |
tcattattcatctcagaaattccattgtgtctatcaattgcctctctcaacaattcctctgcgacattatcatattttcgcccaccctttttcttctctt |
116 |
Q |
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| T |
10601875 |
tcattattcatctcagaaattccattgtgtctatcaattgcctctctcaacaattcctctgcgacattatcgtattttcgcccaccctttttcttctctt |
10601776 |
T |
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| Q |
117 |
tctctttaccatcattatcagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttc |
216 |
Q |
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| T |
10601775 |
tctccttaccatcattatcagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttc |
10601676 |
T |
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| Q |
217 |
actttcatcagaatcaaaacagtgttcttcatc |
249 |
Q |
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| T |
10601675 |
actttcatcagaatcaaaacagtgttcttcatc |
10601643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 16824335 - 16824426
Alignment:
| Q |
135 |
cagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatca |
226 |
Q |
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| T |
16824335 |
cagaagaactttcatcatcactttcagaaatctcattcacctcatccaccataaaatcctcatcactagtctcattttcttcactttcatca |
16824426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 16968759 - 16968848
Alignment:
| Q |
136 |
agaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatc |
225 |
Q |
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| T |
16968759 |
agaagaattgtcatcatcattgccaaaaatctcattcatctcatcaaccctaaaatcctcatcactggtctcattttcttcactttcatc |
16968848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 17008111 - 17008180
Alignment:
| Q |
134 |
tcagaagaactatcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctag |
203 |
Q |
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| T |
17008111 |
tcagaagaactgtcatcatcattgtcagaaatctcattcagctcctcaactttaaaatcttcatcactag |
17008180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 16992522 - 16992609
Alignment:
| Q |
145 |
atcgtcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatca |
232 |
Q |
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| T |
16992522 |
atcgtcatcattgtctgaaatctcattcggctcatcaacttcaaaatcttcatcactagaatcatttgcttcactcttatccgaatca |
16992609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 35262774 - 35262691
Alignment:
| Q |
149 |
tcatcattgtcagaaatctcattcagctcatcaactctaaaatcctcatcgctagtctcattttcttcactttcatcagaatca |
232 |
Q |
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| T |
35262774 |
tcatgattgtctgaaatttcattcagttcatcaactgcaaaatcttcatcactagagtcattttcttcactctcatcagaatca |
35262691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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