View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_2 (Length: 705)
Name: NF16743_low_2
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_2 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 332 - 705
Target Start/End: Complemental strand, 32425995 - 32425622
Alignment:
| Q |
332 |
ctttcgaataaaccatcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatcac |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
32425995 |
ctttcgaataaaccatcaaaacaatgaacttcacaaatgtgaacttcaatacccgaaacgcaaattcattaggaagaagggaaactagacacaagatcac |
32425896 |
T |
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| Q |
432 |
aataaaatctcattacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatca |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425895 |
aataaaatctcattacttggtaaacataatataaatcctgcatgtctcggacgtaattcaatattttatctacattggccaaaagaatttgtctggatca |
32425796 |
T |
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| Q |
532 |
taatttcatgcagcatgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcttatccgcctggatttgcagaggcgt |
631 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
32425795 |
taatttcatgcagcatgtgttccaatcaggacgagagtctactgattatttgcccatcctgcatttggagaagcgtatccgccttgatttgcagaggcgt |
32425696 |
T |
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| Q |
632 |
gtccagcttgatttggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcct |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425695 |
gtccagcttgatttggaggaacgtatccgccttaatttggagtagcgtaagcgttgaaggtgagcattgttcct |
32425622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 32426288 - 32425982
Alignment:
| Q |
10 |
agaacctgtgttaattgtcgggatcaaactttgaatctctttcatattaatcaacgaccatgatctgtacacannnnnnn-gaaaattttgtttacactt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32426288 |
agaacctgtgttaattgtcgggatcaaactttgaatctctttcatattaatcaacgaccatgatctgtacacattttttttgaaaattttgtttacactt |
32426189 |
T |
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| Q |
109 |
tcagttaagaaaatggaattaataatggttgacagttagacattccgtgagacaaatcacaaagatgatgattataaatttctcacgactattcaactga |
208 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426188 |
tcagttaagaaaatggaattaatcatggttgacagttagacattccgtaagacaaatcacaaagatgatgattataaatttctcacgactattcaactga |
32426089 |
T |
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| Q |
209 |
agtgtatcagataagtatannnnnnnactactaaactattatacttaatgaagtatatcagacaattctgttttaataaactatgacacttaactttcga |
308 |
Q |
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| T |
32426088 |
agtgtatcagataaatatatttttttactaataaactatgatacttaatgaagtatatcagacaattctgttttaataaactatgacacttaactttcga |
32425989 |
T |
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| Q |
309 |
ataaacc |
315 |
Q |
| |
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||||||| |
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| T |
32425988 |
ataaacc |
32425982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 601
Target Start/End: Complemental strand, 32421859 - 32421822
Alignment:
| Q |
564 |
gagagtctactgattatttgcccatcctgcatttggag |
601 |
Q |
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| T |
32421859 |
gagagtctactgattatttgaccatccagcatttggag |
32421822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 32421658 - 32421602
Alignment:
| Q |
594 |
atttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggagg |
650 |
Q |
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| T |
32421658 |
atttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggagg |
32421602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 673
Target Start/End: Complemental strand, 32421687 - 32421603
Alignment:
| Q |
589 |
cctgcatttggagaagcttatccgcctggatttgcagaggcgtgtccagcttgatttggaggaacgtatccgccttaatttggag |
673 |
Q |
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| T |
32421687 |
cctgcatttggaggagcatatccaccttgatttggaggggcgtatccgccttgatttggaggggcgtatccagcttgatttggag |
32421603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 332 - 448
Target Start/End: Complemental strand, 1544193 - 1544078
Alignment:
| Q |
332 |
ctttcgaataaaccatcaaaacaatgaacttcacaaat-gtgaacttcaatacccgaaaagcaaattcattaggaagaagggaaactaaacacaagatca |
430 |
Q |
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||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||| |
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| T |
1544193 |
ctttcgaataaaccatcaaaataatgaacttcaaaaattgtaaacttcaatacccgaaacacaaattcattatgaagaagggaaactagacctaagat-- |
1544096 |
T |
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| Q |
431 |
caataaaatctcattact |
448 |
Q |
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| T |
1544095 |
ctataaaatctcattact |
1544078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 148 - 315
Target Start/End: Complemental strand, 1544349 - 1544180
Alignment:
| Q |
148 |
acattccgtgagacaaatcacaaagatgat-----gattataaatttctcacgactattcaactgaagtgtatcagataagtatannnnnnnactactaa |
242 |
Q |
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|||||| || ||||||||||||||||| || ||| || |||||||||||||||||| || |||||| |||||||| |||| |||| ||| |
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| T |
1544349 |
acattcagtaagacaaatcacaaagatcatatcatgatcatgaatttctcacgactattcggcttaagtgtgtcagataaatatatttttt-actaataa |
1544251 |
T |
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| Q |
243 |
actattatacttaatgaagtatatcagacaattctgttttaataaactatgacacttaactttcgaataaacc |
315 |
Q |
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|||| |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
1544250 |
actacgatacttaatgaagtgtatcagacaattttgttttaataaac--tgacacttaactttcgaataaacc |
1544180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 1544071 - 1544026
Alignment:
| Q |
557 |
tcaggacgagagtctactgattatttgcccatcctgcatttggaga |
602 |
Q |
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||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
1544071 |
tcaggacgagagtctactgattatttgaccaaccagcatttggaga |
1544026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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