View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16743_low_21 (Length: 215)

Name: NF16743_low_21
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16743_low_21
NF16743_low_21
[»] chr1 (4 HSPs)
chr1 (3-198)||(48471667-48471859)
chr1 (53-162)||(3621976-3622082)
chr1 (108-162)||(48470943-48470997)
chr1 (108-162)||(3622591-3622644)
[»] chr5 (4 HSPs)
chr5 (4-162)||(31111240-31111395)
chr5 (108-162)||(2458293-2458347)
chr5 (53-162)||(2457698-2457804)
chr5 (108-162)||(31110541-31110595)
[»] chr3 (6 HSPs)
chr3 (4-162)||(53145326-53145475)
chr3 (53-162)||(37104407-37104513)
chr3 (108-162)||(21811934-21811988)
chr3 (108-162)||(37105016-37105070)
chr3 (108-162)||(53144621-53144675)
chr3 (6-122)||(21812434-21812553)
[»] chr4 (5 HSPs)
chr4 (4-162)||(55010898-55011047)
chr4 (53-162)||(37275700-37275806)
chr4 (108-162)||(37275143-37275197)
chr4 (108-162)||(55011687-55011741)
chr4 (101-156)||(198944-198999)
[»] chr2 (1 HSPs)
chr2 (89-162)||(2650284-2650357)
[»] chr8 (2 HSPs)
chr8 (118-162)||(32666698-32666742)
chr8 (8-49)||(32666804-32666845)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 48471667 - 48471859
Alignment:
Q  3 tagaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaa 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||    
T  48471667 tagaaaagatttaggctgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgagaggtt---gaagacaataaaaa 48471763  T
Q  103 gaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggtttnnnnnnncttttccatgtaaaatgccaccaaaaata 198  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||       |||| ||||||||||||||||||||||||    
T  48471764 gaaagatatagtgtggacaatttacagtaagattaatgttccctttcaatccagtggtttaaaaaaactttcccatgtaaaatgccaccaaaaata 48471859  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 3622082 - 3621976
Alignment:
Q  53 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 152  Q
    |||||||||||||||||||  |||||| ||||||||||   |||| | |||||||||||||||| |||||  |||  ||| || |||||||||||| |||    
T  3622082 ggtggtgggtctattggtgtctcatgagaggttgaaga---caatgagaagaaagatatagtgtagacagcctatgataaaatcaatgttcccttttaat 3621986  T
Q  153 ctagtggttt 162  Q
    ||| ||||||    
T  3621985 ctaatggttt 3621976  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 48470997 - 48470943
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    ||||||||| |||||| ||| |||||||||||||||| ||| |||||||||||||    
T  48470997 atatagtgtagacagtctatggtaagattaatgttccattttaatctagtggttt 48470943  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 3622591 - 3622644
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||||||||||||| ||||||||||| |||||| ||||| |||||| ||||||    
T  3622591 atatagtgtggacagtctatagtaagatcaatgtt-ccttttaatctaatggttt 3622644  T

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Target: chr5 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 31111240 - 31111395
Alignment:
Q  4 agaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaag 103  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||   |||||||||||||||    
T  31111240 agaaaagatttaggctgaaatcaatggtttaggggtggttcttggaatcggtggtgggtctattggtggttcatgagaggtt---gaagacaataaaaag 31111336  T
Q  104 aaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31111337 aaagatatagtgtggacagttgatagtaagattaatgttccctttcaatctagtggttt 31111395  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 2458293 - 2458347
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  2458293 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 2458347  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 2457804 - 2457698
Alignment:
Q  53 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 152  Q
    |||||||||||||||||||  |||||| ||||||||||   |||| | ||||||||||||||| ||||||  |||  ||| || |||||||||||| |||    
T  2457804 ggtggtgggtctattggtgtctcatgagaggttgaaga---caatgagaagaaagatatagtgcggacagcctatgataaaatcaatgttcccttttaat 2457708  T
Q  153 ctagtggttt 162  Q
     || ||||||    
T  2457707 ttaatggttt 2457698  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 31110595 - 31110541
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    ||||| ||| |||||| ||| |||||||||||||||||||| |||||||||||||    
T  31110595 atataatgtagacagtctatggtaagattaatgttcccttttaatctagtggttt 31110541  T

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Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 53145326 - 53145475
Alignment:
Q  4 agaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaag 103  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         |||||||||||||||    
T  53145326 agaaaagatttaggctgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtggttcatga---------gaagacaataaaaag 53145416  T
Q  104 aaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53145417 aaagatatagtgtggatagtttatagtaagattaatgttccctttcaatctagtggttt 53145475  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 37104513 - 37104407
Alignment:
Q  53 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 152  Q
    |||||||||||||||||||  |||||| |||||   ||||||||| | |||||||||||||||||||||   |||  ||| || |||||||||||| |||    
T  37104513 ggtggtgggtctattggtgtctcatgagaggtt---gaagacaatgagaagaaagatatagtgtggacaacctatgataaaatcaatgttcccttttaat 37104417  T
Q  153 ctagtggttt 162  Q
    ||| ||||||    
T  37104416 ctaatggttt 37104407  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 21811988 - 21811934
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  21811988 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 21811934  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 37105016 - 37105070
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  37105016 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 37105070  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 53144675 - 53144621
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    ||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||    
T  53144675 atatagtgtagacagtctatggtaagattaatgttcccttttaatctagtggttt 53144621  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 21812434 - 21812553
Alignment:
Q  6 aaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggt------ggtgggtctattggtgcttcatgaaaggttgaagaagacaataa 99  Q
    |||||||||||| |||||||||| |||||  ||||| ||||||| |||||      ||||||||||||||||  |||||| |||||   ||||||||| |    
T  21812434 aaaagatttaggctgaaatcaattgtttaatggtggttcttggagtcggttttggtggtgggtctattggtgtctcatgagaggtt---gaagacaatga 21812530  T
Q  100 aaagaaagatatagtgtggacag 122  Q
     |||||||||||||| |||||||    
T  21812531 gaagaaagatatagtatggacag 21812553  T

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Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 55011047 - 55010898
Alignment:
Q  4 agaaaagatttagggtgaaatcaatggtttaggggtggctcttggaatcggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaag 103  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||         |||||||||||||||    
T  55011047 agaaaagatttaggctgaaatcaatggtttagggttgactcttggaatcggtggtgggtctattggtggttcatga---------gaagacaataaaaag 55010957  T
Q  104 aaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55010956 aaagatatagtgtggatagtttatagtaagattaatgttccctttcaatctagtggttt 55010898  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 37275700 - 37275806
Alignment:
Q  53 ggtggtgggtctattggtgcttcatgaaaggttgaagaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaat 152  Q
    |||||||||||||||||||  | |||| ||||||||||   |||| | |||||||||||||| |||||||| |||  ||| || |||||||||||| |||    
T  37275700 ggtggtgggtctattggtgtcttatgagaggttgaaga---caatgagaagaaagatatagtatggacagtctatgataaaatcaatgttcccttttaat 37275796  T
Q  153 ctagtggttt 162  Q
    ||| ||||||    
T  37275797 ctaatggttt 37275806  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 37275197 - 37275143
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||    
T  37275197 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggttt 37275143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 55011687 - 55011741
Alignment:
Q  108 atatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    ||||||| | |||||| |||||||||||||||||||||||| |||||||||||||    
T  55011687 atatagtatagacagtctatagtaagattaatgttcccttttaatctagtggttt 55011741  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 198944 - 198999
Alignment:
Q  101 aagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctag 156  Q
    ||||||||||||||||||| || ||||||||| || |||||||||| || ||||||    
T  198944 aagaaagatatagtgtggatagcttatagtaaaatcaatgttccctatccatctag 198999  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 2650357 - 2650284
Alignment:
Q  89 gaagacaataaaaagaaagatatagtgtggacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    ||||||||| | ||||||||||||||||||| ||  |||  ||| ||||||||||||||| |||||| ||||||    
T  2650357 gaagacaatgagaagaaagatatagtgtggatagcctatgataaaattaatgttcccttttaatctaatggttt 2650284  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 32666742 - 32666698
Alignment:
Q  118 gacagtttatagtaagattaatgttccctttcaatctagtggttt 162  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||    
T  32666742 gacagtctatggtaagattaatgttcccttttaatctagtggttt 32666698  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 32666845 - 32666804
Alignment:
Q  8 aagatttagggtgaaatcaatggtttaggggtggctcttgga 49  Q
    |||||||||| |||||||| | ||||||||||||||||||||    
T  32666845 aagatttaggctgaaatcatttgtttaggggtggctcttgga 32666804  T

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