View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_3 (Length: 479)
Name: NF16743_low_3
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 262 - 464
Target Start/End: Complemental strand, 47662312 - 47662109
Alignment:
| Q |
262 |
gatagaatggataggaaatgttannnnnnnactaaaggaaatgctttgtttggttactaatatatattttttcacttttgaatataacaacgctcgaagg |
361 |
Q |
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| T |
47662312 |
gatagaatggataggaaatgttatttttttactaaaggaaatgctttgtttggttactaatatatattttttcacttttgaatataacaacgctcgaagg |
47662213 |
T |
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| Q |
362 |
agtggtcaatatttatttaccggttaaaaagactctgttccactcacataaccatgac-aagtgttagcactaattagcaaaataagtagagatgactaa |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47662212 |
agtggtcaatatttatttaccggttaaaaagactctgttccattcacataaccatgacaaagtgttagcactaattagcaaaataagtagagatgactaa |
47662113 |
T |
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| Q |
461 |
aaat |
464 |
Q |
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|||| |
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| T |
47662112 |
aaat |
47662109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 48 - 196
Target Start/End: Complemental strand, 47662525 - 47662377
Alignment:
| Q |
48 |
ttcttcatatttttgtcactatagttttagttactttatgtgatcttgtataataaacnnnnnnnactcaatatatttagccttgcatacataactttca |
147 |
Q |
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| T |
47662525 |
ttcttcatatttttgtcactatagtttttgttactttatgtgatcttgtataataaactttttttactcaatatatttagccttgtatacataactttca |
47662426 |
T |
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| Q |
148 |
aactttaattgcaccaattcttaactacaatgcatgacattgaatgaaa |
196 |
Q |
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| T |
47662425 |
aactttaattgcaccaattcttaactacaatgcatgatattgaatgaaa |
47662377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 11783898 - 11783849
Alignment:
| Q |
138 |
ataactttcaaactttaattgcaccaattcttaactacaatgcatgacat |
187 |
Q |
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| T |
11783898 |
ataactttcaaactttaattgcacgaatttctaactagaatgcataacat |
11783849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 6447787 - 6447863
Alignment:
| Q |
113 |
actcaatatatttagccttgcatacataactttcaaactttaattgcaccaattcttaactacaatgcatgacattg |
189 |
Q |
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| T |
6447787 |
actcaatatatttagccttgtatacataagtttcaaactttaattacacgaatccttaactaaaatgtataacattg |
6447863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 5010422 - 5010498
Alignment:
| Q |
115 |
tcaatatatttagccttgcatacataactttcaaactttaattgcaccaattcttaactacaatgcatgacattgaa |
191 |
Q |
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|||||||||||||| ||| | |||||||||||||||||||||||||| ||| ||||| || |||| || |||||||| |
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| T |
5010422 |
tcaatatatttagcattgtacacataactttcaaactttaattgcacgaatccttaaataaaatgaataacattgaa |
5010498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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