View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_4 (Length: 478)
Name: NF16743_low_4
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Original strand, 24298710 - 24299175
Alignment:
| Q |
13 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacaccgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
112 |
Q |
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| T |
24298710 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacactgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
24298809 |
T |
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| Q |
113 |
ccaacattggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtgt |
212 |
Q |
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| T |
24298810 |
ctaacatcggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtat |
24298909 |
T |
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| Q |
213 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagctaccgacaatggtgtgaggatcaagact |
312 |
Q |
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| T |
24298910 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagcaaccgacaatggtgtgaggatcaagact |
24299009 |
T |
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| Q |
313 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctatcatcatagaccaagagtatt |
412 |
Q |
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| T |
24299010 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctgtcatcatagaccaagagtatt |
24299109 |
T |
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| Q |
413 |
gtccatggaacgcgtgctccaaaaaggtaatcactccaaaatttgtcattatttcacaatgcaaat |
478 |
Q |
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| T |
24299110 |
gtccatggaacgcgtgctccaaaaaggtaatcactccaaaatttgtcattatttcacaatgcaaat |
24299175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 24243488 - 24243023
Alignment:
| Q |
13 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacaccgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24243488 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacactgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
24243389 |
T |
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| Q |
113 |
ccaacattggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtgt |
212 |
Q |
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| T |
24243388 |
ctaacatcggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtat |
24243289 |
T |
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| Q |
213 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagctaccgacaatggtgtgaggatcaagact |
312 |
Q |
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| T |
24243288 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagcaactgacaatggtgtgaggatcaagact |
24243189 |
T |
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| Q |
313 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctatcatcatagaccaagagtatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24243188 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctgtcatcatagaccaagagtatt |
24243089 |
T |
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| Q |
413 |
gtccatggaacgcgtgctccaaaaaggtaatcactccaaaatttgtcattatttcacaatgcaaat |
478 |
Q |
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| T |
24243088 |
gtccatggaacgcgtgctccaaaaaggtaatcactccaaaatttgtcattatttcacaatgcaaat |
24243023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 24231790 - 24231359
Alignment:
| Q |
17 |
ttacatttgatagcttcacaattactgcccctggagacagtcccaacaccgatggaatccacatgggaaaatcaactggtgttaaaattcttaacaccaa |
116 |
Q |
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||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
24231790 |
ttacatttgatggcttcacagttactgccccttcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaacaccaa |
24231691 |
T |
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| Q |
117 |
cattggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtgttgga |
216 |
Q |
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| T |
24231690 |
tatcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaagtgtggacctggtcatggtattagtgttgga |
24231591 |
T |
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| Q |
217 |
agccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagctaccgacaatggtgtgaggatcaagacttggc |
316 |
Q |
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|||||||||| || |||||| ||||| |||||||| || ||||| |||||||||||||||| || || || | |||||||||||||| |||||||||| |
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| T |
24231590 |
agccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaaccgcaactcaaaatggtgtgaggattaagacttggc |
24231491 |
T |
|
| Q |
317 |
ctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctatcatcatagaccaagagtattgtcc |
416 |
Q |
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| T |
24231490 |
ctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcacgaaccctatcatcattgaccaagagtattgtcc |
24231391 |
T |
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| Q |
417 |
atggaacgcgtgctccaaaaaggtaatcactc |
448 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
24231390 |
atggaacgcgtgcaacaaaaaggtaatcactc |
24231359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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