View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_5 (Length: 475)
Name: NF16743_low_5
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 459
Target Start/End: Original strand, 31632722 - 31633175
Alignment:
| Q |
6 |
caccaccaccatcatctcaatgcattttaccaacaattctaatttctcatgcataggacaaattcttaaaatttgcatcatcaatcaaaatgattagaac |
105 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31632722 |
caccgccaccatcatctcaatgcattctaccaacaattctaatttctcatacataggacaaacccttaaaatttgcatcatcaatcaaaatgattagaac |
31632821 |
T |
|
| Q |
106 |
acaataatcaaccaaatcattttggtttgttgtgcccgatgaattggctaagcatgttgtttctgaggatacgaaagttgtgaccaaattcacaagctct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
31632822 |
acaataatcaaccaaatcattttggtttgttgtgcccgatgaattggctaagcatgttgtttgtgagggtaccaaagttgtgaccaaattcacaagctct |
31632921 |
T |
|
| Q |
206 |
tagatttgggatcttgtttactataggttgttaatgggtcagtgtgtctgtattgaactgattggatcttcttgatccattttgttaatgaaaatgatgg |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||| |
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| T |
31632922 |
tagatttgggatcttgtttactataggttgttaatgggagagtgtgtctgtattgaattgattggatcttgttgatcctttttgttaatgaaaatggtgg |
31633021 |
T |
|
| Q |
306 |
aattaataatcctttttgtataatataattgtgctagtttatgttttatttgtttggaccagagtaaccaagattcaacctctttgtattatttgaaatt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31633022 |
aattaataatcctttttgtataatataattgtgctagtttatgttttatctgtttggaccagagtaaccaagattcaacctctttgtactatttgaaatt |
31633121 |
T |
|
| Q |
406 |
gctgccttttttcattctttaaagatatgaaatgtatgtttggtttggtgtttc |
459 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31633122 |
gctgccttttttcattctttaaagatatgaaatgtatgtttggtttgatgtttc |
31633175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 254 - 402
Target Start/End: Original strand, 26436170 - 26436320
Alignment:
| Q |
254 |
tgtattgaactgattggatcttcttgatccattttgttaatgaaaatgatggaattaataatcctttttgtataa--tataattgtgctagtttatgttt |
351 |
Q |
| |
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|||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||| |||||||||| ||||||||||| ||||||||||| |
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| T |
26436170 |
tgtaatgaactgattggatcttgttgatcccttttgttaatgaaaatggtggaattaatgatcttttttgtatatactataattgtgcaagtttatgttt |
26436269 |
T |
|
| Q |
352 |
tatttgtttggaccagagtaaccaagattcaacctctttgtattatttgaa |
402 |
Q |
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||||||||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
26436270 |
tatttgtttgggccagagtaaccaagattcaatatctttgtactatttgaa |
26436320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 26436001 - 26436107
Alignment:
| Q |
132 |
ttgttgtgcccgatgaattggctaagcatgttgtttctgaggatacgaaagttgtgaccaaattcacaagctcttagatttgggatcttgtttactatag |
231 |
Q |
| |
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||||| |||||| ||||||||| ||||||| ||||||||||| ||| || | ||| || || || || || ||||||||||| ||||| |||| |||||| |
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| T |
26436001 |
ttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttagatttgagatctagtttcctatag |
26436100 |
T |
|
| Q |
232 |
gttgtta |
238 |
Q |
| |
|
||||||| |
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|
| T |
26436101 |
gttgtta |
26436107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 24307433 - 24307501
Alignment:
| Q |
145 |
tgaattggctaagcatgttgtttctgaggatacgaaagttgtgaccaaattcacaagctcttagatttg |
213 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||| |||| ||||||||| ||||| || ||||||||||| |
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|
| T |
24307433 |
tgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttagatttg |
24307501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 6 - 451
Target Start/End: Original strand, 45576274 - 45576719
Alignment:
| Q |
6 |
caccaccaccatcatctcaatgcattttaccaacaattctaatttctcatgcataggacaaattcttaaaatttgcatcatcaatcaaaatgattagaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
45576274 |
caccaccaccatcatctcaatgcattctaccaacaattctaatttctcatacataggacaaaccctcaaaatttgcatcatcaatcaaaatgattagaac |
45576373 |
T |
|
| Q |
106 |
acaataatcaaccaaatcattttggtttgttgtgcccgatgaattggctaagcatgttgtttctgaggatacgaaagttgtgaccaaattcacaagctct |
205 |
Q |
| |
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|||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
45576374 |
acaataatgaaccaaatcattttggcttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctct |
45576473 |
T |
|
| Q |
206 |
tagatttgggatcttgtttactataggttgttaatgggtcagtgtgtctgtattgaactgattggatcttcttgatccattttgttaatgaaaatgatgg |
305 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||| ||||||||||||||||| ||| |
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|
| T |
45576474 |
tagatttgagatcttgtttactataggttgttaatgggtcactgtgtatgtattgaactgattggatcttgtttatcctttttgttaatgaaaatggtgg |
45576573 |
T |
|
| Q |
306 |
aattaataatcctttttgtataatataattgtgctagtttatgttttatttgtttggaccagagtaaccaagattcaacctctttgtattatttgaaatt |
405 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45576574 |
aattaataatcctttttgtctaatataattgtgctagtttatgttttatctgtttggaccagagtaaccaagattcaacctctttgtactatttgaaatt |
45576673 |
T |
|
| Q |
406 |
gctgccttttttcattctttaaagatatgaaatgtatgtttggttt |
451 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
45576674 |
gctgccttttttctttctttaacaatatgaaatgtatgtttggttt |
45576719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 787100 - 787209
Alignment:
| Q |
6 |
caccaccaccatcatctcaatgcattttaccaacaattctaatttctcatgcataggacaaattcttaaaatttgcatcatcaatcaaaatgattagaac |
105 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||| |
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| T |
787100 |
caccaccaccatcatctcaatgcattctaacaacaattctaatttctcatacataggacaaacgctcaaaatttgcatcatcaatcaaaatgaatagaac |
787199 |
T |
|
| Q |
106 |
acaataatca |
115 |
Q |
| |
|
|||||||||| |
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|
| T |
787200 |
acaataatca |
787209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 21082964 - 21082866
Alignment:
| Q |
22 |
tcaatgcattttaccaacaattctaatttctcatgcataggacaaattcttaaaatttgcatcatcaatcaaaatgattagaacacaataatcaaccaaa |
121 |
Q |
| |
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|||||||||| | |||| ||||| |||||||||| || | |||||| || ||||||| |||||| | ||||||| |||| |||||||||||||| |||| |
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| T |
21082964 |
tcaatgcattctgccaataattccaatttctcatacacaagacaaaccctcaaaattttcatcatta-tcaaaatcattacaacacaataatcaaacaaa |
21082866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 47317492 - 47317560
Alignment:
| Q |
145 |
tgaattggctaagcatgttgtttctgaggatacgaaagttgtgaccaaattcacaagctcttagatttg |
213 |
Q |
| |
|
||||||||| || |||||||||||||||| ||| |||| ||||||||| || || || ||||| ||||| |
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|
| T |
47317492 |
tgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttcttaaatttg |
47317560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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