View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16743_low_6 (Length: 444)
Name: NF16743_low_6
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 14908560 - 14908142
Alignment:
| Q |
10 |
gagatgaaatacaaaagacaggggacaatagccaagacatcctagacattagaaagcctaaaactagacatctttaatattaatcaaaatcaaaatttcc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14908560 |
gagatgaaatacaaaagacaggggacaatagccaagacatcctagacattagaaagcctaaaattagacatctttaatattaatcaaaatcaaaatttcc |
14908461 |
T |
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| Q |
110 |
caaaaactactactcataatttatacgtattagaataataaaaagagtgaacgacatttgaatgctagtatcatacctatattatattcctacaattttg |
209 |
Q |
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| T |
14908460 |
caaaaagtactactcataatttatacgtattagagtaataaaaagtgtgaacgacatttgaatgccagtattatacctatattatattcctataattttg |
14908361 |
T |
|
| Q |
210 |
tccctacccttcaaacttccaaacaaacccttagcgaggacgaaaaaagggaatcactataaatatactacacacaatttctgcataacccatgttatgc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
14908360 |
tccctacccttcaaacttccaaacaaacccttagcgaggacgaaaaaagggaaccactataaatagactacacacaatttctgtataacccatgttatgc |
14908261 |
T |
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| Q |
310 |
tatgttatgagtaggtcacaatggaagatcaagtgaaatcatttgcaacgattcaaacccatgaatcccattcctaacaccttcaatcttgttagtcttc |
409 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14908260 |
tatgttatgagtaggtcacaatggaagatcaactgaaatcatttgcaacgattcaaacccatgaatcccattcctaacaccttcaatcttgttagtcttc |
14908161 |
T |
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| Q |
410 |
aagattccaacaaaaaatt |
428 |
Q |
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| T |
14908160 |
aagattccaacaaaaaatt |
14908142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 51274791 - 51274692
Alignment:
| Q |
326 |
cacaatggaagatcaagtgaaatcatttgcaacgattcaaacccatgaatcccattcctaacaccttcaatcttgttagtcttcaagattccaacaaaaa |
425 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||| ||||||||||||| |||||||||||| |
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| T |
51274791 |
cacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccctcaatctcgttagtcttcaagtttccaacaaaaa |
51274692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 9059244 - 9059178
Alignment:
| Q |
89 |
ttaatcaaaatcaaaatttcccaaaaactactactcataatttatacgtattagaataataaaaaga |
155 |
Q |
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|||||||||||||||||| | | ||| ||||| |||||||||| |||| |||||| |||||||||| |
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| T |
9059244 |
ttaatcaaaatcaaaattccatataaaatactattcataatttacacgtgttagaacaataaaaaga |
9059178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 49840225 - 49840269
Alignment:
| Q |
97 |
aatcaaaatttcccaaaaactactactcataatttatacgtatta |
141 |
Q |
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|||||||||||| |||||||| ||||||||||||||||| |||| |
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| T |
49840225 |
aatcaaaatttcataaaaactaatactcataatttatacgcatta |
49840269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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