View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16743_low_7 (Length: 404)
Name: NF16743_low_7
Description: NF16743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16743_low_7 |
 | |
|
| [»] scaffold0570 (2 HSPs) |
| | |
|
| [»] scaffold0201 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 96 - 387
Target Start/End: Complemental strand, 21088670 - 21088380
Alignment:
| Q |
96 |
caacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21088670 |
caacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcacgtgtatctattgttatcttttcagaaaactatgcttcc |
21088571 |
T |
|
| Q |
196 |
tcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacat |
295 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21088570 |
tcaaaatggtgcttgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacctg-ttttttacaaaatagatccattacat |
21088472 |
T |
|
| Q |
296 |
atgaagaagcagacttggagttacaagaaaacctttgaaaagcatatgcgagatttaaagaacgataatgacaagttacagaaattacagaa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21088471 |
atgaagaagcagacttggagttacaagaaaacctttgaaaagcatatgcgagatttaaagaacgataatgacaagttacagaaattacagaa |
21088380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 23354054 - 23353720
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||| ||||||||||||| |||||| || |||| | |||| |||||||||||| |||| |||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
23354054 |
ttcacgagccatctttatgatgctctaagccgaaagacagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactca |
23353955 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23353954 |
tcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatg |
23353855 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| |||| |||||||||||||||| | |||| |||||||||| |||| ||| ||||||||| ||||||||||| || |||||||||| |
|
|
| T |
23353854 |
caagaaatatatgtaacagattgtgataccag-ttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgaaaa |
23353756 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| ||||||||| ||| || ||||||||||||| |
|
|
| T |
23353755 |
acataagcgagatttgaagcacaataatgacaagtt |
23353720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 376
Target Start/End: Complemental strand, 23474566 - 23474228
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |||| | |||| |||||||||||| |||| |||||| |||||||||| |||| ||||||||| ||| |
|
|
| T |
23474566 |
ttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactca |
23474467 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| ||| |||||||||||| ||| |||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23474466 |
tcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatg |
23474367 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||| |||||||||| |||| ||| |||||||||| ||||||||||| || |||| | ||| |
|
|
| T |
23474366 |
caagaaatatatggtacagattgtgatacctg-ttttttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaa |
23474268 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagttacag |
376 |
Q |
| |
|
|||| ||||||||| |||| | ||||||||||||||||| |
|
|
| T |
23474267 |
acataagcgagatttgaagagcaataatgacaagttacag |
23474228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 23406903 - 23406569
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||| | | || || ||||||||| |||| |||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
23406903 |
ttcactagccatctttatgacgctctgagccgaaagaaaattaaaatctttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactca |
23406804 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23406803 |
tcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatg |
23406704 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| |||||||||| | || ||| ||||||||| ||||||||||| || |||||| ||| |
|
|
| T |
23406703 |
caagaaatatatggaacagattgtgatacctg-ttttttacaacatagatccatcaaatgtgaggaagcagaccgggagttacaagcaagcctttgcaaa |
23406605 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||| |
|
|
| T |
23406604 |
acataagcgagatttaaagcacaataatgacaagtt |
23406569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 37 - 376
Target Start/End: Complemental strand, 23442034 - 23441696
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
|||||| |||||||||||| ||||| ||| |||| | |||| |||||||||||| |||| |||||| |||||||||| |||| ||||||||| ||| |
|
|
| T |
23442034 |
ttcacatgccatctttatgatgctcggagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagataagatatcgccagcactca |
23441935 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| ||| |||||||||||| ||| |||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23441934 |
tcagagccattgaggagtcacatgtgtctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatg |
23441835 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||| |||||||||| |||| ||| |||||||||| ||||||||||| || |||| | ||| |
|
|
| T |
23441834 |
caagaaatatatggtacagattgtgatacctg-ttttttacaacatagatccatcacatgtgaggaagcagactgggagttacaagcaagccttcgcaaa |
23441736 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagttacag |
376 |
Q |
| |
|
|||| ||||||||| |||| | ||||||||||||||||| |
|
|
| T |
23441735 |
acataagcgagatttgaagagcaataatgacaagttacag |
23441696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 23449424 - 23449090
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||| ||||||||||||| |||| |||| |||| | |||| ||| |||||||| |||| |||||| ||||||||| ||||||||| ||||| ||| |
|
|
| T |
23449424 |
ttcactagccatctttatgatgctttgagccgaaagaaagttgaaacatttatagacaacaatgagcttcgaaaaggagatgagatctcggcagcactca |
23449325 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23449324 |
tcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatg |
23449225 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| |||| |||||||||||||||| | |||| |||||||||| |||| ||| ||||||||| ||||||||||| || |||||| ||| |
|
|
| T |
23449224 |
caagaaatatatgcaacagattgtgataccag-ttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaa |
23449126 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| || |||||| ||| || ||||||||||||| |
|
|
| T |
23449125 |
acataagcaagatttgaagcacaataatgacaagtt |
23449090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 23465557 - 23465223
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||| ||||||||||| | |||||||| |||| | |||| |||||||||||| |||| |||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
23465557 |
ttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactca |
23465458 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23465457 |
tcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttgaatgagctcaaaaagattcttgaatg |
23465358 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||| |||||||||| |||| ||| ||||||||| ||||||||||| || |||||| ||| |
|
|
| T |
23465357 |
caagaaatatatggaacagattgtgataccag-ttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaa |
23465259 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| |||| |||| ||| || |||| || ||||| |
|
|
| T |
23465258 |
acataagcgaaatttgaagcacaataacgataagtt |
23465223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 23501187 - 23500853
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||| ||||||||||| | |||||||| |||| | |||| |||||||||||| |||| |||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
23501187 |
ttcactagccatctttacgacgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcggcagcactca |
23501088 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||| ||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
23501087 |
tcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcgtcaaaatggtgcttgaatgagctcaaaaagattcttgaatg |
23500988 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
||||||| |||||| |||||||||||||| | |||| |||||||||| |||| ||| ||||||||| ||||||||||| || |||||| ||| |
|
|
| T |
23500987 |
taagaaatatatggagcagattgtgataccag-ttttttacaacatagatccatcacatgtgaggaagcagaccgggagttacaagcaagcctttgcaaa |
23500889 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| ||||||||| ||| || ||||||||||||| |
|
|
| T |
23500888 |
acataagcgagatttgaagcacaataatgacaagtt |
23500853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 37 - 376
Target Start/End: Complemental strand, 23480914 - 23480576
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||| | |||| |||||||||||| |||| ||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
23480914 |
ttcaccagccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaataagcttcaaaaaggagatgagatctcgccagcactca |
23480815 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||| ||||| || ||||||||| ||||| ||||||| ||||||||| ||||||||||| | |||||||||||| ||||||| ||||| |
|
|
| T |
23480814 |
tcaaagccattgagaagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttgaatgagctcaagaagattcttgaatg |
23480715 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| || |||||| ||||||||||| | ||||||||||||||| |||| ||| ||| ||||| |||||||| || || | |||| ||| |
|
|
| T |
23480714 |
caagaaatataaggaacacattgtgataccag-ttttttacaaaatagatccatcacatgtgaggaaccagaccgggagttacgagcaagcttttgcaaa |
23480616 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagttacag |
376 |
Q |
| |
|
|||| ||||||||| |||| | ||||||||||||||||| |
|
|
| T |
23480615 |
acataagcgagatttgaagagcaataatgacaagttacag |
23480576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 23435622 - 23435291
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |||| | |||| |||||||||||| |||| |||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
23435622 |
ttcacatgccatctttatgatgctctgagccgaaagaaagttgaaacctttatagacaacaatgagcttcaaaaaggagatgagatctcgccagcactca |
23435523 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||| ||||||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
23435522 |
tcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcttcaaaatggtgcttaaatgagctcaaaaagattctagaatg |
23435423 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||| ||| ||||||| || |||||||||| |||| || ||||| |||| ||| ||||||||| ||||||||||| || | |||| ||| |
|
|
| T |
23435422 |
caagcaatatatggaattgaccgtgatacctg-ttttttacaacat---tccatcacatgtgaggaagcagaccgggagttacaagcaagcatttgcaaa |
23435327 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| ||||||||| ||| || ||||||||||||| |
|
|
| T |
23435326 |
acataagcgagatttgaagcacaataatgacaagtt |
23435291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 23456188 - 23455854
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| | |||| |||||| ||||| |||| || ||| |||||||||| |||||||| ||| || ||| |
|
|
| T |
23456188 |
ttcacaagccatctttatgatgctttgagtcgaaagaaagttgaaaccttcatagacaacaatgaccttcaaaaaggagatgagatctcaccaacactca |
23456089 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| || | |||||||||||| ||| |||||||| ||||| ||||||| ||| ||||||||||||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
23456088 |
tcaaaaccattgaggagtcacatgtgtctattgtcatcttctcagaaaactacgcttcctcaaaatggtgtttgaatgatctcaaaaagattctagaatg |
23455989 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||| |||| || ||||||| |||| ||| |||||| || ||||||||||| || |||||| ||| |
|
|
| T |
23455988 |
caagcaatatatggaacagatcgtgatacct-attttttacaacattgatccatcacatgtgaggaagcaaaccgggagttacaagcaagcctttgcaaa |
23455890 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| || |||||| ||| || |||||| |||||| |
|
|
| T |
23455889 |
acataagcaagatttgaagcacaataatgccaagtt |
23455854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 37 - 376
Target Start/End: Complemental strand, 23388543 - 23388205
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||| ||||||||||||| | ||||||| |||| | |||| |||||||||||| |||| |||||| |||||||||| |||||||| |||||| ||| |
|
|
| T |
23388543 |
ttcacgagccatctttatgatactctgagccgaaaaaaagttgaaacctttatagacaacaatgagcttgaaaaaggagatgagatctcaccagcactca |
23388444 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || || ||| | ||||| ||||||| |||||||||||||||||||| | |||||||||||| ||||||| |||| |
|
|
| T |
23388443 |
tcaaagccattgaggagtcacacgtgtcaattatcatcttctcagaaaattatgcttcctcaaaatggtgcttgaatgagctcaagaagattcttcaatg |
23388344 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||| |||||||| | |||| ||| |||||||||| |||||||| || || |||| ||| |
|
|
| T |
23388343 |
caagaaatatatgcaacagattgtgatacctg-ttttttacaacatagatccctcacatgtgaggaagcagactgggagttacgagcaagccttcacaaa |
23388245 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagttacag |
376 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
23388244 |
acatatgcgagatttgaagctcaataatgacaagttacag |
23388205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 268
Target Start/End: Complemental strand, 21087540 - 21087310
Alignment:
| Q |
38 |
tcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcat |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||| | || | ||| |||||||||||| |||| |||||||||||||||| ||||| | |||| | |||| |
|
|
| T |
21087540 |
tcacaagccatctttatgatgctctgagccaaaataatgttcaaacctttatagacaacaataagcttaaaaaaggagataagatcacaccagaactcat |
21087441 |
T |
|
| Q |
138 |
cgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgc |
237 |
Q |
| |
|
| |||| ||||| |||||| || ||| |||| ||||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
21087440 |
caaagccattgaagagtcacatgcatcgattgacatcttctcagaaaactacgcttcctcaaaatggtgcttgaatgagctcaaaaagattctagaatgc |
21087341 |
T |
|
| Q |
238 |
aagaaatttatggaacagattgtgatacctg |
268 |
Q |
| |
|
||||||| || |||||| ||||||||||||| |
|
|
| T |
21087340 |
aagaaatataaggaacaaattgtgatacctg |
21087310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 37 - 268
Target Start/End: Complemental strand, 36025618 - 36025390
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| | |||| |||| |||||||||||||| |||||| |||||||||||||||||||| ||||| | | |
|
|
| T |
36025618 |
ttcacaagccatctttatgaagctctgagc--aagaa-agttataacatttatagatgacaatgagcttgaaaaaggagacgagatctcgtcagcactga |
36025522 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| ||||||||||| |||| | || |||||| || ||||| ||| || ||||||||||||||||||||| | |||||| ||| ||||||| |||||| |
|
|
| T |
36025521 |
tcaaagctattgagaagtcgtctgcatctatcgtcatcttctcaaaagactatgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatg |
36025422 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctg |
268 |
Q |
| |
|
||||||| || | ||||||||||||||||| |
|
|
| T |
36025421 |
caagaaagataatggacagattgtgatacctg |
36025390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 36004817 - 36004631
Alignment:
| Q |
80 |
taacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatcttttc |
179 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||||||||||||| ||||| | ||| |||||||||| || || | || |||||| || ||||| || |
|
|
| T |
36004817 |
taacatttatagatgacaatgagcttgaaaaaggagacgagatctcgtcagcactgatcaaagctattgaagattcgtctgcatctatcgtcatcttctc |
36004718 |
T |
|
| Q |
180 |
agaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgtgatacc |
266 |
Q |
| |
|
| || ||| ||||||||||||||||| | |||||| ||| ||||||| |||||| |||||| | || ||||||||||||||| |
|
|
| T |
36004717 |
aaaagactacgcttcctcaaaatggtgcttgaatgaactcgtcaagattctagaatgtaagaaagatcagggacagattgtgatacc |
36004631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 243
Target Start/End: Complemental strand, 36017471 - 36017317
Alignment:
| Q |
89 |
tagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatcta |
188 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| ||||| | ||| |||| |||||||||||| || |||||| || || || || || ||| |
|
|
| T |
36017471 |
tagatgacagcgagcttgaaaaaggagacgagatctcatcagcactgatcaaagccattgaggagtcagatgcatctatagtcatattctcgaaagacta |
36017372 |
T |
|
| Q |
189 |
tgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaa |
243 |
Q |
| |
|
|||||| || ||||| || | |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
36017371 |
tgcttcttctaaatgatgcttgaatgaactcgtcaagattctagaatgcaagaaa |
36017317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 36034385 - 36034314
Alignment:
| Q |
85 |
tttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtca |
156 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||||||||| ||||| | ||| |||| |||||||||||| |
|
|
| T |
36034385 |
tttatagacgacagcgagcttgaaaaaggagacgagatctcatcagcactgatcaaagccattgaggagtca |
36034314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 21086902 - 21086940
Alignment:
| Q |
1 |
tttctcagctttcataatgaagatactctcagtacattc |
39 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
21086902 |
tttctcagctttcataatgaggatactcgcagtacattc |
21086940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 40 - 372
Target Start/End: Original strand, 9612 - 9943
Alignment:
| Q |
40 |
acaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcg |
139 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| | | || ||||||||| || |||| |||||| |||||||||| ||||||||| ||||| ||||| |
|
|
| T |
9612 |
acaagccatctttatgatgctctgagccgaaagaaaattgaaacctttatggacaacaatgagcttcaaaaaggagatgagatctcggcagcactcatca |
9711 |
T |
|
| Q |
140 |
aagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaa |
239 |
Q |
| |
|
|||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
9712 |
aagccattgaggagtcacatgcatctattgtaatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatgcaa |
9811 |
T |
|
| Q |
240 |
gaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaagca |
339 |
Q |
| |
|
| ||| |||||||||||| |||||||||| |||| |||||||| | || ||| ||||||||| | |||||| || || |||||||||| || |
|
|
| T |
9812 |
gcaatatatggaacagatggtgatacctg-ttttttacaacttagatccagcaaatgtgagaaagcagactggaagttacgagcaagcctttgaaaaaca |
9910 |
T |
|
| Q |
340 |
tatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|| ||||||||| |||| | ||||||||||||| |
|
|
| T |
9911 |
taagcgagatttgaagagcaataatgacaagtt |
9943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 3305 - 3397
Alignment:
| Q |
168 |
tgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaatttatggaacagattgt |
260 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||||||| || | ||||||||||||||||||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
3305 |
tgttatcttctcataaaactatgcttcctcaaaatgatgcttgaatgagctcaaaaagattatagaatgctagaaatatatggaacagattgt |
3397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 13731 - 13397
Alignment:
| Q |
37 |
ttcacaagccatctttatgctgctctgagtcgaagcatagttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattca |
136 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||| | | || ||||||||| || |||| |||||| |||||||||| ||||||||| ||||| ||| |
|
|
| T |
13731 |
ttcagaagccatctttatgatgctctgatccgaaagaaaattgaaacctttatggacaacaatgagcttcaaaaaggagatgagatctcggcagcactca |
13632 |
T |
|
| Q |
137 |
tcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatg |
236 |
Q |
| |
|
|| |||| |||||||||||| || ||||||||| ||||| ||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
13631 |
tcaaagccattgaggagtcacatgcatctattgtcatcttctcagaaaactatgcttcctcaaaatggtgcttaaatgagctcaaaaagattcttgaatg |
13532 |
T |
|
| Q |
237 |
caagaaatttatggaacagattgtgatacctgnnnnnnnacaaaatagatccattacatatgaagaagcagacttggagttacaagaaaacctttgaaaa |
336 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| ||||||||| | || ||| |||||||||| | |||||| || || |||||| ||| |
|
|
| T |
13531 |
caagaaatatatggaacagattgtgatacctg-ttttttacaacatagatccagcaaatgtgaggaagcagactggaagttaccagcaagcctttgcaaa |
13433 |
T |
|
| Q |
337 |
gcatatgcgagatttaaagaacgataatgacaagtt |
372 |
Q |
| |
|
|||| ||||||||| ||| || |||| || ||||| |
|
|
| T |
13432 |
acataagcgagatttgaagcacaataacgataagtt |
13397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 16334662 - 16334820
Alignment:
| Q |
85 |
tttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaa |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| | ||| |||| ||||| |||||||||| |||||| || ||||| ||||||| |
|
|
| T |
16334662 |
tttatagatgacaacgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttatcagaaa |
16334761 |
T |
|
| Q |
185 |
tctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaa |
243 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
16334762 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa |
16334820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 16124989 - 16124831
Alignment:
| Q |
85 |
tttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaa |
184 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||||||| ||||| | ||| |||| ||||| |||||||||| |||||| || |||||||||||| |
|
|
| T |
16124989 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
16124890 |
T |
|
| Q |
185 |
tctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaa |
243 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
16124889 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa |
16124831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 85 - 243
Target Start/End: Complemental strand, 16127142 - 16126984
Alignment:
| Q |
85 |
tttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaa |
184 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||||||| ||||| | ||| |||| ||||| |||||||||| |||||| || |||||||||||| |
|
|
| T |
16127142 |
tttatagacgacagcgagcttaaaaaaggagatgagatctcatcagcactgatcaaagccattgaagagtcatgtgcatctatagtcatcttttcagaag |
16127043 |
T |
|
| Q |
185 |
tctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaa |
243 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
16127042 |
actatgcttcttcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa |
16126984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 12894610 - 12894778
Alignment:
| Q |
75 |
agttttaacctttatagatgacaacgagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatc |
174 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |||||||||| ||||| || ||||||| ||| |||| ||||||||||||| || ||||||||| ||| |
|
|
| T |
12894610 |
agttataacctttatagatgacaatgagcttcaaaaaggagatgagatatcctcagcattgatcaaagccattgaggagtcatatgcatctattgtcatc |
12894709 |
T |
|
| Q |
175 |
ttttcagaaatctatgcttcctcaaaatggtgttcgaatgagctcaaaaagattcaagaatgcaagaaa |
243 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||| |
|
|
| T |
12894710 |
ttctcaatagactatgcttcctcaaaatggtgtttgaatgaactcgtcaagattctagaatgcaagaaa |
12894778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 167562 - 167687
Alignment:
| Q |
100 |
gagcttaaaaaaggagacgagatctcgccagcattcatcgaagctattgaggagtcatgtgtatctattgttatcttttcagaaatctatgcttcctcaa |
199 |
Q |
| |
|
|||||| |||||||||| |||||||||||| || ||||| |||| |||||||||| | || ||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
167562 |
gagcttcaaaaaggagatgagatctcgccaacactcatcaaagccattgaggagtaacatgcatctattgtcatcttctcagaaaactatgcttcctcat |
167661 |
T |
|
| Q |
200 |
aatggtgttcgaatgagctcaaaaag |
225 |
Q |
| |
|
||||||| | ||||||| |||||||| |
|
|
| T |
167662 |
aatggtgcttgaatgagatcaaaaag |
167687 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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