View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16744_high_8 (Length: 228)
Name: NF16744_high_8
Description: NF16744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16744_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 3642688 - 3642495
Alignment:
| Q |
18 |
aaagacaatttaacctgataacaaagaggtatggtttagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggcaggtaatttccaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3642688 |
aaagacaatttaacctgataacaaagaggtatggtatagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggcaggtaatttccaa |
3642589 |
T |
|
| Q |
118 |
gagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaaaacgtct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3642588 |
gagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaaaacgtct |
3642495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 207
Target Start/End: Complemental strand, 9807227 - 9807041
Alignment:
| Q |
22 |
acaatttaacctgataacaaagaggtatggtttagtgccagaaagagagcgttatgattc-acggttgatcttttgattcgggcaggtaatttccaagag |
120 |
Q |
| |
|
|||||||||||| || |||||||| |||||| || |||| |||| ||||| ||| || | |||||||||||||| |||||||||| |||| |||| |
|
|
| T |
9807227 |
acaatttaaccttatgacaaagagttatggtatactgccggaaaaagagcactatagttgtatggttgatcttttgagtcgggcaggtcattttagagag |
9807128 |
T |
|
| Q |
121 |
acggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaaaac |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9807127 |
gcggaaaaactaatggagacaatgtcaatacgaccaaatattgccatatggggtgctcttttaaatggttgccagattcatgaaaac |
9807041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University