View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16744_low_1 (Length: 682)
Name: NF16744_low_1
Description: NF16744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16744_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 20 - 670
Target Start/End: Original strand, 37574562 - 37575210
Alignment:
| Q |
20 |
tgatgatgcatgaggatgaggccaatacaaccaaatttactatacaataccctctctctcttccatgcatgcatgatgcatccatataccatacaacctt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574562 |
tgatgatgcatgaggatgaggccaatacaaccaaatttacaatacaataccctctctctcttccatgcatgcatgatgcatccatataccatacaacctt |
37574661 |
T |
|
| Q |
120 |
ggtaagtagtactatagctagttaataccgtttgtatttatctggagtactataccataaccacctgcaattataaatcactactgcctcatatgttttt |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574662 |
ggtaagtagtactatagctagttaataccgtttgtatttatctggagtactataccataaccacctgcaattataaatcactactgcctcatatgttttt |
37574761 |
T |
|
| Q |
220 |
tgttctagtgcactgcacatattaatattaattaccactaccatttcaagacaaactactccgacacattttctgtcagatgttccttaaacattacatg |
319 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574762 |
tgttctactgcactgcacatattaatattaattaccactaccatttcaagacaaactactccgacacattttctgtcagatgttccttaaacattacatg |
37574861 |
T |
|
| Q |
320 |
catatattaataaccattaaccagtctagtgtatcaattttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaatctaaga |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
37574862 |
catatattaataaccattaaccagtctagtgtatcaattttcatccaatttaaaatacttatactaagactctagagaaatcaaaccctcaaatctaaga |
37574961 |
T |
|
| Q |
420 |
catatgtataattaagaagtagtgtgatttggtttggtaaaataaattcgaagaaattattgaaccaatcaaagatcaacctcgaaacaatttgtgcaac |
519 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574962 |
catatgtataattaagaagtagtatgatttggtttggtaaaataaattcgaagaaattattgaaccaatcaaagatcaacctcgaaacaatttgtgcaac |
37575061 |
T |
|
| Q |
520 |
aattagggaaaggatctcttttgattaatatgctagcaccacatatgtagccaactgattgcaatt-aataggtttgtctcctctctcatatatgatttt |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||| ||| |
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| T |
37575062 |
aattagggaaaggatctcttttgattaatatgccaccaccacatatgtagccaagtgattgcagttaaataggtttgtctc--ctctcatacctga-ttt |
37575158 |
T |
|
| Q |
619 |
ttcgctttatgtaacaacttacaaataagctctgatattctccaacttactg |
670 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
37575159 |
ttcgctttatgtaacaacttacaaataaactccgatattctccaacttactg |
37575210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 357 - 561
Target Start/End: Complemental strand, 32969926 - 32969707
Alignment:
| Q |
357 |
ttttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaa-tctaagacatatgtataattaagaagtagtgtgatttggtttg |
455 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||| |||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
32969926 |
ttttcatccaatttaaattacttataataacactccagagaaattaaactctcaaaatctaggacatatgtataattatgaagtagtatgatttggtttg |
32969827 |
T |
|
| Q |
456 |
gtaaaataaattcgaagaaattattgaaccaatca------------aagatcaacctcgaaaca--atttgtgcaacaattagggaaaggatctctttt |
541 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
32969826 |
gtagaattaattcgaagaaattattgaaccaatcaattataatagccaagatcaacctcgaaacaatatttgtacaacaattagggaaagaatctctttt |
32969727 |
T |
|
| Q |
542 |
gattaatatgctagcaccac |
561 |
Q |
| |
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|||| |||| ||| |||||| |
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|
| T |
32969726 |
gattgatatactaccaccac |
32969707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 347 - 670
Target Start/End: Complemental strand, 37167799 - 37167465
Alignment:
| Q |
347 |
agtgtatcaattttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaa-tctaagacatatgtataattaagaagtagtgtg |
445 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| |||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
37167799 |
agtgtatcaattttcccccaatttaaattacttataataacacg--agagaaattaaattctcaaaatctaagacatatgtataattaagaagtagtatg |
37167702 |
T |
|
| Q |
446 |
atttggtttggtaaaataaattcgaagaaattattgaaccaatca------------aagatcaacctcgaaacaatttgtgcaacaattagggaaagga |
533 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||||||||||| || |||||||| |||||||| ||| |||||||||||| || || |
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| T |
37167701 |
atttggtttggtaaaattaattcgaaaaaataattgaaccaatcaactataatagccaaaatcaaccttgaaacaatctgtacaacaattaggg-aatga |
37167603 |
T |
|
| Q |
534 |
tctcttttgattaatatgctagcacca-catatgtagc---caactgattgcaattaataggtttgtctcctctctcatatatga-ttttttcgctttat |
628 |
Q |
| |
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| | |||| ||| |||||||| ||||| || ||||||| |||||||||| |||||||| | | | ||| |||| || | ||| |||||||||||||| |
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| T |
37167602 |
tatttttttattgatatgctaccaccaccagatgtagccaacaactgattgtaattaataag-ctctgtcccctctgatctctgatttttttcgctttat |
37167504 |
T |
|
| Q |
629 |
gtaacaacttacaaataagctctgatattctccaacttactg |
670 |
Q |
| |
|
|| || |||||| |||||||||||||||||||||||||| |
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|
| T |
37167503 |
gt---aatttacaagcaagctctgatattctccaacttactg |
37167465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 54683514 - 54683570
Alignment:
| Q |
433 |
aagaagtagtgtgatttggtttggtaaaataaattcgaagaaattattgaaccaatc |
489 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
54683514 |
aagaagtagtatgatttggtttggtaaaattaattcgaagaaattattgaaccaatc |
54683570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 347 - 449
Target Start/End: Original strand, 54683398 - 54683499
Alignment:
| Q |
347 |
agtgtatcaattttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaa-tctaagacatatgtataattaagaagtagtgtg |
445 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||| |||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||| || |
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|
| T |
54683398 |
agtgtatcaattttcctccaatttaaattatttataataacacg--agagaaattaaattctcaaaatctaggacatatgtataattaagaagtagtatg |
54683495 |
T |
|
| Q |
446 |
attt |
449 |
Q |
| |
|
|||| |
|
|
| T |
54683496 |
attt |
54683499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 670
Target Start/End: Original strand, 54683678 - 54683730
Alignment:
| Q |
615 |
ttttttcgctttatgtaacaacttacaaataagctctgatattctccaacttactg |
670 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54683678 |
ttttttcgctttatg---caacttacaagcaagctctgatattctccaacttactg |
54683730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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